Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EFY entry

There are 16 chains in PDB entry 8EFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 5PRO 317
B
GLU 2PRO 317
C
GLU 2PRO 317
D
ARG 7PRO 317
E
LEU 6PRO 317
F
LEU 6PRO 317
G
A -2 G 21
H
C 3 T 26
I
ALA 5PRO 317
J
GLU 2PRO 317
K
GLU 2PRO 317
L
ARG 7PRO 317
M
LEU 6PRO 317
N
LEU 6PRO 317
O
T -1 G 21
P
C 3 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are197 helices in PDB entry 8EFY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 35Right-handed alpha
Helix 2
AA2
A
50 63Right-handed alpha
Helix 3
AA3
A
76 86Right-handed alpha
Helix 4
AA4
A
99 102Right-handed 310
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
109 116Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
169 185Right-handed alpha
Helix 10
AB1
A
189 200Right-handed alpha
Helix 11
AB2
A
203 222Right-handed alpha
Helix 12
AB3
A
227 239Right-handed alpha
Helix 13
AB4
A
246 260Right-handed alpha
Helix 14
AB5
A
266 275Right-handed alpha
Helix 15
AB6
A
280 285Right-handed alpha
Helix 16
AB7
A
285 292Right-handed alpha
Helix 17
AB8
A
305 312Right-handed alpha
Helix 18
AB9
B
17 34Right-handed alpha
Helix 19
AC1
B
50 63Right-handed alpha
Helix 20
AC2
B
78 87Right-handed alpha
Helix 21
AC3
B
99 102Right-handed 310
Helix 22
AC4
B
103 108Right-handed alpha
Helix 23
AC5
B
110 114Right-handed 310
Helix 24
AC6
B
147 151Right-handed 310
Helix 25
AC7
B
152 159Right-handed alpha
Helix 26
AC8
B
169 185Right-handed alpha
Helix 27
AC9
B
189 200Right-handed alpha
Helix 28
AD1
B
203 222Right-handed alpha
Helix 29
AD2
B
227 239Right-handed alpha
Helix 30
AD3
B
246 259Right-handed alpha
Helix 31
AD4
B
267 273Right-handed alpha
Helix 32
AD5
B
277 284Right-handed alpha
Helix 33
AD6
B
285 293Right-handed alpha
Helix 34
AD7
B
305 313Right-handed alpha
Helix 35
AD8
C
17 34Right-handed alpha
Helix 36
AD9
C
50 63Right-handed alpha
Helix 37
AE1
C
79 87Right-handed alpha
Helix 38
AE2
C
99 102Right-handed 310
Helix 39
AE3
C
103 109Right-handed alpha
Helix 40
AE4
C
111 116Right-handed alpha
Helix 41
AE5
C
147 151Right-handed 310
Helix 42
AE6
C
152 157Right-handed alpha
Helix 43
AE7
C
169 185Right-handed alpha
Helix 44
AE8
C
189 200Right-handed alpha
Helix 45
AE9
C
203 222Right-handed alpha
Helix 46
AF1
C
227 239Right-handed alpha
Helix 47
AF2
C
246 260Right-handed alpha
Helix 48
AF3
C
266 274Right-handed alpha
Helix 49
AF4
C
277 284Right-handed alpha
Helix 50
AF5
C
285 292Right-handed alpha
Helix 51
AF6
C
305 312Right-handed alpha
Helix 52
AF7
D
17 34Right-handed alpha
Helix 53
AF8
D
50 63Right-handed alpha
Helix 54
AF9
D
78 86Right-handed alpha
Helix 55
AG1
D
99 102Right-handed 310
Helix 56
AG2
D
103 116Right-handed alpha
Helix 57
AG3
D
147 151Right-handed 310
Helix 58
AG4
D
152 158Right-handed alpha
Helix 59
AG5
D
169 185Right-handed alpha
Helix 60
AG6
D
189 199Right-handed alpha
Helix 61
AG7
D
203 221Right-handed alpha
Helix 62
AG8
D
227 238Right-handed alpha
Helix 63
AG9
D
246 259Right-handed alpha
Helix 64
AH1
D
266 275Right-handed alpha
Helix 65
AH2
D
277 285Right-handed alpha
Helix 66
AH3
D
285 290Right-handed alpha
Helix 67
AH4
D
305 312Right-handed alpha
Helix 68
AH5
E
20 35Right-handed alpha
Helix 69
AH6
E
50 63Right-handed alpha
Helix 70
AH7
E
72 74Right-handed 310
Helix 71
AH8
E
77 87Right-handed alpha
Helix 72
AH9
E
99 102Right-handed 310
Helix 73
AI1
E
103 116Right-handed alpha
Helix 74
AI2
E
147 151Right-handed 310
Helix 75
AI3
E
152 157Right-handed alpha
Helix 76
AI4
E
169 185Right-handed alpha
Helix 77
AI5
E
189 200Right-handed alpha
Helix 78
AI6
E
203 222Right-handed alpha
Helix 79
AI7
E
227 239Right-handed alpha
Helix 80
AI8
E
246 261Right-handed alpha
Helix 81
AI9
E
268 274Right-handed alpha
Helix 82
AJ1
E
285 292Right-handed alpha
Helix 83
AJ2
E
306 312Right-handed alpha
Helix 84
AJ3
F
17 35Right-handed alpha
Helix 85
AJ4
F
50 63Right-handed alpha
Helix 86
AJ5
F
78 86Right-handed alpha
Helix 87
AJ6
F
99 102Right-handed 310
Helix 88
AJ7
F
106 116Right-handed alpha
Helix 89
AJ8
F
147 151Right-handed 310
Helix 90
AJ9
F
169 185Right-handed alpha
Helix 91
AK1
F
189 200Right-handed alpha
Helix 92
AK2
F
203 221Right-handed alpha
Helix 93
AK3
F
227 239Right-handed alpha
Helix 94
AK4
F
246 261Right-handed alpha
Helix 95
AK5
F
266 271Right-handed alpha
Helix 96
AK6
F
279 284Right-handed alpha
Helix 97
AK7
F
285 292Right-handed alpha
Helix 98
AK8
F
305 312Right-handed alpha
Helix 99
AK9
I
17 35Right-handed alpha
Helix 100
AL1
I
50 63Right-handed alpha
Helix 101
AL2
I
76 86Right-handed alpha
Helix 102
AL3
I
99 102Right-handed 310
Helix 103
AL4
I
103 109Right-handed alpha
Helix 104
AL5
I
109 116Right-handed alpha
Helix 105
AL6
I
147 151Right-handed 310
Helix 106
AL7
I
152 157Right-handed alpha
Helix 107
AL8
I
169 185Right-handed alpha
Helix 108
AL9
I
189 200Right-handed alpha
Helix 109
AM1
I
203 221Right-handed alpha
Helix 110
AM2
I
227 239Right-handed alpha
Helix 111
AM3
I
246 259Right-handed alpha
Helix 112
AM4
I
266 275Right-handed alpha
Helix 113
AM5
I
280 285Right-handed alpha
Helix 114
AM6
I
285 292Right-handed alpha
Helix 115
AM7
I
305 312Right-handed alpha
Helix 116
AM8
J
17 34Right-handed alpha
Helix 117
AM9
J
50 63Right-handed alpha
Helix 118
AN1
J
78 87Right-handed alpha
Helix 119
AN2
J
99 102Right-handed 310
Helix 120
AN3
J
103 108Right-handed alpha
Helix 121
AN4
J
125 129Right-handed 310
Helix 122
AN5
J
147 151Right-handed 310
Helix 123
AN6
J
152 158Right-handed alpha
Helix 124
AN7
J
169 185Right-handed alpha
Helix 125
AN8
J
189 199Right-handed alpha
Helix 126
AN9
J
203 222Right-handed alpha
Helix 127
AO1
J
227 239Right-handed alpha
Helix 128
AO2
J
246 259Right-handed alpha
Helix 129
AO3
J
266 274Right-handed alpha
Helix 130
AO4
J
277 284Right-handed alpha
Helix 131
AO5
J
285 293Right-handed alpha
Helix 132
AO6
J
305 313Right-handed alpha
Helix 133
AO7
K
17 34Right-handed alpha
Helix 134
AO8
K
50 62Right-handed alpha
Helix 135
AO9
K
78 88Right-handed alpha
Helix 136
AP1
K
99 102Right-handed 310
Helix 137
AP2
K
103 109Right-handed alpha
Helix 138
AP3
K
111 116Right-handed alpha
Helix 139
AP4
K
152 157Right-handed alpha
Helix 140
AP5
K
169 185Right-handed alpha
Helix 141
AP6
K
189 200Right-handed alpha
Helix 142
AP7
K
203 222Right-handed alpha
Helix 143
AP8
K
227 239Right-handed alpha
Helix 144
AP9
K
246 260Right-handed alpha
Helix 145
AQ1
K
266 274Right-handed alpha
Helix 146
AQ2
K
277 284Right-handed alpha
Helix 147
AQ3
K
285 292Right-handed alpha
Helix 148
AQ4
K
305 312Right-handed alpha
Helix 149
AQ5
L
17 34Right-handed alpha
Helix 150
AQ6
L
50 63Right-handed alpha
Helix 151
AQ7
L
78 87Right-handed alpha
Helix 152
AQ8
L
99 102Right-handed 310
Helix 153
AQ9
L
103 108Right-handed alpha
Helix 154
AR1
L
111 116Right-handed alpha
Helix 155
AR2
L
147 151Right-handed 310
Helix 156
AR3
L
152 158Right-handed alpha
Helix 157
AR4
L
169 185Right-handed alpha
Helix 158
AR5
L
189 199Right-handed alpha
Helix 159
AR6
L
203 221Right-handed alpha
Helix 160
AR7
L
227 238Right-handed alpha
Helix 161
AR8
L
246 259Right-handed alpha
Helix 162
AR9
L
266 275Right-handed alpha
Helix 163
AS1
L
277 284Right-handed alpha
Helix 164
AS2
L
285 290Right-handed alpha
Helix 165
AS3
L
305 312Right-handed alpha
Helix 166
AS4
M
20 35Right-handed alpha
Helix 167
AS5
M
50 63Right-handed alpha
Helix 168
AS6
M
72 74Right-handed 310
Helix 169
AS7
M
78 87Right-handed alpha
Helix 170
AS8
M
99 102Right-handed 310
Helix 171
AS9
M
103 116Right-handed alpha
Helix 172
AT1
M
147 151Right-handed 310
Helix 173
AT2
M
152 158Right-handed alpha
Helix 174
AT3
M
169 185Right-handed alpha
Helix 175
AT4
M
189 200Right-handed alpha
Helix 176
AT5
M
203 222Right-handed alpha
Helix 177
AT6
M
227 239Right-handed alpha
Helix 178
AT7
M
246 261Right-handed alpha
Helix 179
AT8
M
268 274Right-handed alpha
Helix 180
AT9
M
285 292Right-handed alpha
Helix 181
AU1
M
307 312Right-handed alpha
Helix 182
AU2
N
17 35Right-handed alpha
Helix 183
AU3
N
50 63Right-handed alpha
Helix 184
AU4
N
78 87Right-handed alpha
Helix 185
AU5
N
99 102Right-handed 310
Helix 186
AU6
N
106 116Right-handed alpha
Helix 187
AU7
N
147 151Right-handed 310
Helix 188
AU8
N
154 158Right-handed 310
Helix 189
AU9
N
169 185Right-handed alpha
Helix 190
AV1
N
189 200Right-handed alpha
Helix 191
AV2
N
203 220Right-handed alpha
Helix 192
AV3
N
227 239Right-handed alpha
Helix 193
AV4
N
246 261Right-handed alpha
Helix 194
AV5
N
266 273Right-handed alpha
Helix 195
AV6
N
279 284Right-handed alpha
Helix 196
AV7
N
285 292Right-handed alpha
Helix 197
AV8
N
305 312Right-handed alpha
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There are 41 sheets in PDB entry 8EFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
66 70first strand
Strand 2
A
93 97parallel
Strand 3
A
140 145parallel
Strand 4
A
41 44parallel
Strand 5
A
161 164parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 123first strand
Strand 2
A
130 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
295 298first strand
Strand 2
A
301 304anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
66 70first strand
Strand 2
B
93 97parallel
Strand 3
B
140 145parallel
Strand 4
B
41 44parallel
Strand 5
B
161 164parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 122first strand
Strand 2
B
131 135anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 188first strand
Strand 2
B
225 226parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
296 298first strand
Strand 2
B
301 303anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
66 70first strand
Strand 2
C
93 97parallel
Strand 3
C
140 145parallel
Strand 4
C
41 44parallel
Strand 5
C
161 164parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 119first strand
Strand 2
C
134 135anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
187 188first strand
Strand 2
C
225 226parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
295 298first strand
Strand 2
C
301 304anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
66 70first strand
Strand 2
D
93 97parallel
Strand 3
D
140 145parallel
Strand 4
D
41 44parallel
Strand 5
D
161 164parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
118 122first strand
Strand 2
D
131 135anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
187 188first strand
Strand 2
D
225 226parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
296 298first strand
Strand 2
D
301 303anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
69 70first strand
Strand 2
E
96 97parallel
Strand 3
E
142 144parallel
Strand 4
E
41 44parallel
Strand 5
E
161 164parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
118 121first strand
Strand 2
E
132 135anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
296 298first strand
Strand 2
E
301 303anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
69 70first strand
Strand 2
F
93 97parallel
Strand 3
F
140 144parallel
Strand 4
F
41 43parallel
Strand 5
F
161 163parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
118 121first strand
Strand 2
F
132 135anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
187 188first strand
Strand 2
F
225 226parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
295 297first strand
Strand 2
F
302 304anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
66 70first strand
Strand 2
I
93 97parallel
Strand 3
I
140 145parallel
Strand 4
I
41 44parallel
Strand 5
I
161 164parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
118 123first strand
Strand 2
I
130 135anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
295 297first strand
Strand 2
I
302 304anti-parallel
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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
66 70first strand
Strand 2
J
93 97parallel
Strand 3
J
140 145parallel
Strand 4
J
41 44parallel
Strand 5
J
161 164parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
118 123first strand
Strand 2
J
130 135anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
296 298first strand
Strand 2
J
301 303anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
66 70first strand
Strand 2
K
92 97parallel
Strand 3
K
139 145parallel
Strand 4
K
41 44parallel
Strand 5
K
161 164parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
187 188first strand
Strand 2
K
225 226parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
295 298first strand
Strand 2
K
301 304anti-parallel
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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
68 70first strand
Strand 2
L
93 97parallel
Strand 3
L
140 145parallel
Strand 4
L
41 44parallel
Strand 5
L
161 164parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
131 135anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
296 298first strand
Strand 2
L
301 303anti-parallel
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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
69 70first strand
Strand 2
M
96 97parallel
Strand 3
M
142 144parallel
Strand 4
M
41 43parallel
Strand 5
M
161 163parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
118 121first strand
Strand 2
M
132 135anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
296 298first strand
Strand 2
M
301 303anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
69 70first strand
Strand 2
N
94 97parallel
Strand 3
N
141 144parallel
Strand 4
N
41 43parallel
Strand 5
N
161 163parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
118 121first strand
Strand 2
N
132 135anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
187 188first strand
Strand 2
N
225 226parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
295 297first strand
Strand 2
N
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il