Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EFZ entry

There are 2 chains in PDB entry 8EFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 50	ASN 536
B	GLY 50	VAL 535

There are 41 helices in PDB entry 8EFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed alpha
Helix 2	AA2	A	125	138	Right-handed alpha
Helix 3	AA3	A	145	150	Right-handed alpha
Helix 4	AA4	A	173	178	Right-handed alpha
Helix 5	AA5	A	184	189	Right-handed 310
Helix 6	AA6	A	196	200	Right-handed 310
Helix 7	AA7	A	244	254	Right-handed alpha
Helix 8	AA8	A	263	265	Right-handed 310
Helix 9	AA9	A	266	272	Right-handed alpha
Helix 10	AB1	A	295	299	Right-handed 310
Helix 11	AB2	A	300	310	Right-handed alpha
Helix 12	AB3	A	312	320	Right-handed alpha
Helix 13	AB4	A	348	360	Right-handed alpha
Helix 14	AB5	A	386	400	Right-handed alpha
Helix 15	AB6	A	401	404	Right-handed 310
Helix 16	AB7	A	418	422	Right-handed 310
Helix 17	AB8	A	459	472	Right-handed alpha
Helix 18	AB9	A	474	492	Right-handed alpha
Helix 19	AC1	A	520	524	Right-handed 310
Helix 20	AC2	A	529	533	Right-handed 310
Helix 21	AC3	B	74	79	Right-handed alpha
Helix 22	AC4	B	125	138	Right-handed alpha
Helix 23	AC5	B	146	150	Right-handed 310
Helix 24	AC6	B	173	178	Right-handed alpha
Helix 25	AC7	B	185	189	Right-handed 310
Helix 26	AC8	B	196	200	Right-handed 310
Helix 27	AC9	B	244	255	Right-handed alpha
Helix 28	AD1	B	263	265	Right-handed 310
Helix 29	AD2	B	266	273	Right-handed alpha
Helix 30	AD3	B	295	299	Right-handed 310
Helix 31	AD4	B	300	309	Right-handed alpha
Helix 32	AD5	B	312	319	Right-handed alpha
Helix 33	AD6	B	348	360	Right-handed alpha
Helix 34	AD7	B	386	401	Right-handed alpha
Helix 35	AD8	B	402	404	Right-handed 310
Helix 36	AD9	B	418	422	Right-handed 310
Helix 37	AE1	B	439	444	Right-handed alpha
Helix 38	AE2	B	459	472	Right-handed alpha
Helix 39	AE3	B	474	491	Right-handed alpha
Helix 40	AE4	B	520	524	Right-handed 310
Helix 41	AE5	B	529	533	Right-handed 310

There are 11 sheets in PDB entry 8EFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	236	241	anti-parallel
Strand 4	A	52	57	parallel
Strand 5	A	259	260	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	91	93	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	101	first strand
Strand 2	A	107	112	anti-parallel
Strand 3	A	162	167	anti-parallel
Strand 4	A	152	159	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	495	508	anti-parallel
Strand 3	A	276	291	anti-parallel
Strand 4	A	424	425	anti-parallel
Strand 5	A	377	383	parallel
Strand 6	A	406	412	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	327	first strand
Strand 2	A	495	508	anti-parallel
Strand 3	A	276	291	anti-parallel
Strand 4	A	428	429	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	534	535	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	214	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	236	241	anti-parallel
Strand 4	B	53	57	parallel
Strand 5	B	259	262	parallel
Strand 6	B	495	508	anti-parallel
Strand 7	B	325	327	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	214	first strand
Strand 2	B	218	223	anti-parallel
Strand 3	B	236	241	anti-parallel
Strand 4	B	53	57	parallel
Strand 5	B	259	262	parallel
Strand 6	B	495	508	anti-parallel
Strand 7	B	276	291	anti-parallel
Strand 8	B	424	429	anti-parallel
Strand 9	B	377	383	parallel
Strand 10	B	406	412	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	91	93	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	101	first strand
Strand 2	B	107	112	anti-parallel
Strand 3	B	162	167	anti-parallel
Strand 4	B	152	159	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	371	first strand
Strand 2	B	374	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EFZ