Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EGK entry

There are 2 chains in PDB entry 8EGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2HIS 369
B
 ALA 2PHE 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8EGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 29Right-handed alpha
Helix 2
AA2
A
41 48Right-handed alpha
Helix 3
AA3
A
68 88Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
106 122Right-handed alpha
Helix 6
AA6
A
135 143Right-handed alpha
Helix 7
AA7
A
143 158Right-handed alpha
Helix 8
AA8
A
162 170Right-handed alpha
Helix 9
AA9
A
174 180Right-handed alpha
Helix 10
AB1
A
197 211Right-handed alpha
Helix 11
AB2
A
224 241Right-handed alpha
Helix 12
AB3
A
259 263Right-handed 310
Helix 13
AB4
A
279 286Right-handed alpha
Helix 14
AB5
A
288 296Right-handed alpha
Helix 15
AB6
A
317 321Right-handed 310
Helix 16
AB7
B
11 29Right-handed alpha
Helix 17
AB8
B
41 48Right-handed alpha
Helix 18
AB9
B
68 87Right-handed alpha
Helix 19
AC1
B
92 96Right-handed 310
Helix 20
AC2
B
97 101Right-handed 310
Helix 21
AC3
B
106 122Right-handed alpha
Helix 22
AC4
B
135 143Right-handed alpha
Helix 23
AC5
B
143 161Right-handed alpha
Helix 24
AC6
B
162 170Right-handed alpha
Helix 25
AC7
B
174 179Right-handed alpha
Helix 26
AC8
B
194 211Right-handed alpha
Helix 27
AC9
B
224 241Right-handed alpha
Helix 28
AD1
B
259 263Right-handed 310
Helix 29
AD2
B
279 286Right-handed alpha
Helix 30
AD3
B
288 296Right-handed alpha
Helix 31
AD4
B
317 321Right-handed 310
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There are 6 sheets in PDB entry 8EGK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
62 66anti-parallel
Strand 3
A
33 37parallel
Strand 4
A
127 131parallel
Strand 5
A
3 8parallel
Strand 6
A
215 221parallel
Strand 7
A
244 250parallel
Strand 8
A
268 270parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
308 312anti-parallel
Strand 3
A
361 366anti-parallel
Strand 4
A
352 358anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
329 334anti-parallel
Strand 3
A
337 342anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
62 66anti-parallel
Strand 3
B
33 37parallel
Strand 4
B
127 131parallel
Strand 5
B
3 8parallel
Strand 6
B
215 221parallel
Strand 7
B
244 250parallel
Strand 8
B
268 270parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
308 312anti-parallel
Strand 3
B
361 365anti-parallel
Strand 4
B
354 358anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
330 334anti-parallel
Strand 3
B
337 341anti-parallel
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