Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EGS entry

There are 3 chains in PDB entry 8EGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
J
 SER 175ALA 194
I
 SER 175ALA 194
Y
 ASP 3LYS 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
28 38Right-handed alpha
Helix 2
AA2
Y
67 72Right-handed alpha
Helix 3
AA3
Y
110 116Right-handed alpha
Helix 4
AA4
Y
119 124Right-handed 310
Helix 5
AA5
Y
135 148Right-handed alpha
Helix 6
AA6
Y
200 204Right-handed 310
Helix 7
AA7
Y
214 226Right-handed alpha
Helix 8
AA8
Y
228 234Right-handed alpha
Helix 9
AA9
Y
283 291Right-handed alpha
Helix 10
AB1
Y
295 302Right-handed 310
Helix 11
AB2
Y
398 406Right-handed alpha
Helix 12
AB3
Y
417 420Right-handed 310
Helix 13
AB4
Y
425 438Right-handed alpha
Helix 14
AB5
Y
445 450Right-handed alpha
Helix 15
AB6
Y
454 462Right-handed alpha
Helix 16
AB7
Y
482 488Right-handed alpha
Helix 17
AB8
Y
501 516Right-handed alpha
Helix 18
AB9
Y
550 564Right-handed alpha
Helix 19
AC1
Y
580 584Right-handed 310
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There are 8 sheets in PDB entry 8EGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
44 46first strand
Strand 2
Y
7 13anti-parallel
Strand 3
Y
74 81anti-parallel
Strand 4
Y
88 91anti-parallel
Strand 5
Y
108 109anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
22 25first strand
Strand 2
Y
565 569parallel
Strand 3
Y
535 541anti-parallel
Strand 4
Y
128 130anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
61 63first strand
Strand 2
Y
102 105anti-parallel
Strand 3
Y
95 99anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
158 165first strand
Strand 2
Y
494 500anti-parallel
Strand 3
Y
308 312anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
235 237first strand
Strand 2
Y
171 177anti-parallel
Strand 3
Y
240 242anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
235 237first strand
Strand 2
Y
171 177anti-parallel
Strand 3
Y
209 213anti-parallel
Strand 4
Y
264 266anti-parallel
Strand 5
Y
251 253anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
281 282first strand
Strand 2
Y
332 339anti-parallel
Strand 3
Y
345 350anti-parallel
Strand 4
Y
381 384anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Y
413 415first strand
Strand 2
Y
465 467anti-parallel
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