Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EGT entry

There are 8 chains in PDB entry 8EGT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLY 6	VAL 60
G	GLY 6	VAL 60
A	ILE 8	PRO 395
B	ILE 8	PRO 395
C	ILE 8	PRO 395
D	ILE 8	PRO 395
F	GLY 6	VAL 60
E	ASN 31	GLN 53

There are 54 helices in PDB entry 8EGT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	19	23	Right-handed 310
Helix 2	AA2	H	41	50	Right-handed alpha
Helix 3	AA3	G	41	50	Right-handed alpha
Helix 4	AA4	A	9	14	Right-handed alpha
Helix 5	AA5	A	18	25	Right-handed alpha
Helix 6	AA6	A	68	72	Right-handed 310
Helix 7	AA7	A	102	107	Right-handed 310
Helix 8	AA8	A	135	140	Right-handed alpha
Helix 9	AA9	A	142	179	Right-handed alpha
Helix 10	AB1	A	182	184	Right-handed 310
Helix 11	AB2	A	191	208	Right-handed alpha
Helix 12	AB3	A	242	251	Right-handed alpha
Helix 13	AB4	A	251	261	Right-handed alpha
Helix 14	AB5	A	263	267	Right-handed alpha
Helix 15	AB6	A	288	298	Right-handed alpha
Helix 16	AB7	B	9	14	Right-handed alpha
Helix 17	AB8	B	18	25	Right-handed alpha
Helix 18	AB9	B	68	72	Right-handed 310
Helix 19	AC1	B	102	107	Right-handed 310
Helix 20	AC2	B	135	139	Right-handed 310
Helix 21	AC3	B	142	179	Right-handed alpha
Helix 22	AC4	B	182	186	Right-handed 310
Helix 23	AC5	B	191	207	Right-handed alpha
Helix 24	AC6	B	219	224	Right-handed 310
Helix 25	AC7	B	242	251	Right-handed alpha
Helix 26	AC8	B	251	256	Right-handed alpha
Helix 27	AC9	B	288	298	Right-handed alpha
Helix 28	AD1	B	346	348	Right-handed 310
Helix 29	AD2	B	365	368	Right-handed 310
Helix 30	AD3	C	9	14	Right-handed alpha
Helix 31	AD4	C	18	25	Right-handed alpha
Helix 32	AD5	C	68	74	Right-handed 310
Helix 33	AD6	C	102	107	Right-handed 310
Helix 34	AD7	C	134	140	Right-handed alpha
Helix 35	AD8	C	142	180	Right-handed alpha
Helix 36	AD9	C	191	206	Right-handed alpha
Helix 37	AE1	C	215	219	Right-handed 310
Helix 38	AE2	C	241	251	Right-handed alpha
Helix 39	AE3	C	251	256	Right-handed alpha
Helix 40	AE4	C	288	298	Right-handed alpha
Helix 41	AE5	C	346	348	Right-handed 310
Helix 42	AE6	C	365	368	Right-handed 310
Helix 43	AE7	D	9	14	Right-handed alpha
Helix 44	AE8	D	18	25	Right-handed alpha
Helix 45	AE9	D	70	74	Right-handed 310
Helix 46	AF1	D	102	108	Right-handed 310
Helix 47	AF2	D	142	180	Right-handed alpha
Helix 48	AF3	D	191	208	Right-handed alpha
Helix 49	AF4	D	241	252	Right-handed alpha
Helix 50	AF5	D	288	298	Right-handed alpha
Helix 51	AF6	D	346	348	Right-handed 310
Helix 52	AF7	D	365	369	Right-handed 310
Helix 53	AF8	F	41	49	Right-handed alpha
Helix 54	AF9	E	41	50	Right-handed alpha

There are 23 sheets in PDB entry 8EGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	351	353	parallel
Strand 3	A	369	378	anti-parallel
Strand 4	A	123	132	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	76	first strand
Strand 2	A	351	353	parallel
Strand 3	A	369	378	anti-parallel
Strand 4	A	358	363	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	114	115	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	189	first strand
Strand 2	A	388	393	parallel
Strand 3	A	339	344	anti-parallel
Strand 4	A	236	241	anti-parallel
Strand 5	A	268	271	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	329	332	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	349	first strand
Strand 2	A	381	382	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	C	83	89	parallel
Strand 3	C	114	118	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	350	353	parallel
Strand 3	B	369	380	anti-parallel
Strand 4	B	358	364	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	350	353	parallel
Strand 3	B	369	380	anti-parallel
Strand 4	B	123	131	anti-parallel
Strand 5	C	95	96	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	89	first strand
Strand 2	B	114	119	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	189	first strand
Strand 2	B	388	393	parallel
Strand 3	B	339	344	anti-parallel
Strand 4	B	236	241	anti-parallel
Strand 5	B	268	271	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	329	332	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	308	309	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	369	380	anti-parallel
Strand 3	C	358	364	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	353	first strand
Strand 2	C	369	380	anti-parallel
Strand 3	C	123	131	anti-parallel
Strand 4	D	95	96	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	189	first strand
Strand 2	C	388	393	parallel
Strand 3	C	339	344	anti-parallel
Strand 4	C	236	240	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	280	first strand
Strand 2	C	329	332	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	76	first strand
Strand 2	D	350	353	parallel
Strand 3	D	377	380	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	89	first strand
Strand 2	D	114	118	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	372	375	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	189	first strand
Strand 2	D	388	393	parallel
Strand 3	D	340	344	anti-parallel
Strand 4	D	236	240	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	280	first strand
Strand 2	D	329	332	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	285	first strand
Strand 2	D	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EGT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGT