Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EGW entry

There are 2 chains in PDB entry 8EGW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 40	ASN 356
B	GLU 44	ASP 467

There are 9 helices in PDB entry 8EGW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	68	Right-handed 310
Helix 2	AA2	A	87	91	Right-handed alpha
Helix 3	AA3	A	172	175	Right-handed 310
Helix 4	AA4	A	199	201	Right-handed 310
Helix 5	AA5	A	284	289	Right-handed 310
Helix 6	AA6	B	97	101	Right-handed 310
Helix 7	AA7	B	164	168	Right-handed 310
Helix 8	AA8	B	279	283	Right-handed 310
Helix 9	AA9	B	387	392	Right-handed alpha

There are 16 sheets in PDB entry 8EGW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	52	first strand
Strand 2	A	126	134	parallel
Strand 3	A	114	120	anti-parallel
Strand 4	A	79	81	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	100	103	anti-parallel
Strand 3	A	92	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	236	246	parallel
Strand 3	A	220	229	anti-parallel
Strand 4	A	177	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	203	209	anti-parallel
Strand 3	A	191	197	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	279	280	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	265	first strand
Strand 2	A	343	353	parallel
Strand 3	A	327	335	anti-parallel
Strand 4	A	291	294	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	313	316	anti-parallel
Strand 3	A	305	307	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	118	126	parallel
Strand 3	B	105	112	anti-parallel
Strand 4	B	72	74	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	89	92	anti-parallel
Strand 3	B	81	83	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	145	first strand
Strand 2	B	231	241	parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	198	204	anti-parallel
Strand 3	B	185	191	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	274	275	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	260	first strand
Strand 2	B	334	344	parallel
Strand 3	B	318	327	anti-parallel
Strand 4	B	285	289	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	296	298	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	376	383	anti-parallel
Strand 3	B	417	422	anti-parallel
Strand 4	B	407	411	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	368	first strand
Strand 2	B	456	466	parallel
Strand 3	B	433	441	anti-parallel
Strand 4	B	395	398	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EGW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGW