Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EGX entry

There are 2 chains in PDB entry 8EGX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 43	ASP 467
A	PRO 42	VAL 462

There are 9 helices in PDB entry 8EGX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	97	101	Right-handed 310
Helix 2	AA2	B	179	183	Right-handed 310
Helix 3	AA3	B	279	283	Right-handed 310
Helix 4	AA4	B	387	392	Right-handed alpha
Helix 5	AA5	A	65	68	Right-handed 310
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	199	201	Right-handed 310
Helix 8	AA8	A	284	288	Right-handed 310
Helix 9	AA9	A	428	431	Right-handed 310

There are 18 sheets in PDB entry 8EGX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	120	125	parallel
Strand 3	B	106	109	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	90	92	anti-parallel
Strand 3	B	81	83	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	142	first strand
Strand 2	B	231	239	parallel
Strand 3	B	215	223	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	198	204	anti-parallel
Strand 3	B	185	191	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	274	275	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	260	first strand
Strand 2	B	334	344	parallel
Strand 3	B	318	327	anti-parallel
Strand 4	B	285	289	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	271	first strand
Strand 2	B	304	307	anti-parallel
Strand 3	B	296	298	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	376	383	anti-parallel
Strand 3	B	418	421	anti-parallel
Strand 4	B	409	411	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	367	first strand
Strand 2	B	459	465	parallel
Strand 3	B	433	438	anti-parallel
Strand 4	B	398	399	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	51	first strand
Strand 2	A	126	133	parallel
Strand 3	A	114	120	anti-parallel
Strand 4	A	79	82	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	100	102	anti-parallel
Strand 3	A	93	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	237	246	parallel
Strand 3	A	220	227	anti-parallel
Strand 4	A	180	182	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	203	209	anti-parallel
Strand 3	A	191	197	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	279	280	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	265	first strand
Strand 2	A	343	353	parallel
Strand 3	A	327	336	anti-parallel
Strand 4	A	290	294	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	276	first strand
Strand 2	A	313	316	anti-parallel
Strand 3	A	305	307	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	365	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	421	426	anti-parallel
Strand 4	A	412	416	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	405	first strand
Strand 2	A	438	445	anti-parallel
Strand 3	A	453	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EGX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EGX