Analysis of interatomic Contacts of Structural Units in PDB entry:
8EHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EHE entry

There are 2 chains in PDB entry 8EHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 184PRO 535
B
 GLU 24LEU 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8EHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
189 193Right-handed 310
Helix 2
AA2
A
200 204Right-handed 310
Helix 3
AA3
A
211 217Right-handed alpha
Helix 4
AA4
A
282 293Right-handed alpha
Helix 5
AA5
A
338 351Right-handed alpha
Helix 6
AA6
A
370 385Right-handed alpha
Helix 7
AA7
A
386 389Right-handed 310
Helix 8
AA8
A
475 494Right-handed alpha
Helix 9
AA9
A
498 509Right-handed alpha
Helix 10
AB1
A
528 534Right-handed alpha
Helix 11
AB2
B
40 44Right-handed 310
Helix 12
AB3
B
82 86Right-handed 310
Helix 13
AB4
B
89 94Right-handed 310
Helix 14
AB5
B
107 113Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8EHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
308 313parallel
Strand 3
A
226 231parallel
Strand 4
A
357 360parallel
Strand 5
A
393 396parallel
Strand 6
A
419 424parallel
Strand 7
A
442 445parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 324first strand
Strand 2
A
329 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
B
124 125anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
453 456first strand
Strand 2
A
469 473anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 67first strand
Strand 2
B
70 80anti-parallel
Strand 3
B
134 135parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 67first strand
Strand 2
B
70 80anti-parallel
Strand 3
B
47 53anti-parallel
Strand 4
B
30 38anti-parallel
Strand 5
B
98 104anti-parallel
Strand 6
B
137 145anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il