Analysis of interatomic Contacts of Structural Units in PDB entry:
8EI5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EI5 entry

There are 8 chains in PDB entry 8EI5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 492	GLU 865
B	ASP 492	GLU 865
C	ARG 493	GLU 865
D	ARG 493	GLU 865
E	ARG 5	LEU 17
F	ARG 5	LEU 17
G	CYS 7	LEU 17
H	CYS 7	LEU 17

There are 89 helices in PDB entry 8EI5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	494	508	Right-handed alpha
Helix 2	AA2	A	520	522	Right-handed 310
Helix 3	AA3	A	523	534	Right-handed alpha
Helix 4	AA4	A	536	542	Right-handed 310
Helix 5	AA5	A	555	571	Right-handed alpha
Helix 6	AA6	A	572	577	Right-handed 310
Helix 7	AA7	A	594	598	Right-handed 310
Helix 8	AA8	A	600	618	Right-handed alpha
Helix 9	AA9	A	627	635	Right-handed alpha
Helix 10	AB1	A	640	648	Right-handed alpha
Helix 11	AB2	A	648	660	Right-handed alpha
Helix 12	AB3	A	662	666	Right-handed 310
Helix 13	AB4	A	700	715	Right-handed alpha
Helix 14	AB5	A	717	732	Right-handed alpha
Helix 15	AB6	A	733	738	Right-handed 310
Helix 16	AB7	A	741	751	Right-handed alpha
Helix 17	AB8	A	756	763	Right-handed alpha
Helix 18	AB9	A	773	786	Right-handed alpha
Helix 19	AC1	A	787	800	Right-handed alpha
Helix 20	AC2	A	807	811	Right-handed 310
Helix 21	AC3	A	837	839	Right-handed 310
Helix 22	AC4	A	849	864	Right-handed alpha
Helix 23	AC5	B	494	508	Right-handed alpha
Helix 24	AC6	B	520	522	Right-handed 310
Helix 25	AC7	B	523	534	Right-handed alpha
Helix 26	AC8	B	536	542	Right-handed 310
Helix 27	AC9	B	555	571	Right-handed alpha
Helix 28	AD1	B	572	577	Right-handed 310
Helix 29	AD2	B	594	598	Right-handed 310
Helix 30	AD3	B	600	618	Right-handed alpha
Helix 31	AD4	B	627	635	Right-handed alpha
Helix 32	AD5	B	640	648	Right-handed alpha
Helix 33	AD6	B	648	660	Right-handed alpha
Helix 34	AD7	B	700	715	Right-handed alpha
Helix 35	AD8	B	717	732	Right-handed alpha
Helix 36	AD9	B	733	738	Right-handed 310
Helix 37	AE1	B	741	751	Right-handed alpha
Helix 38	AE2	B	756	763	Right-handed alpha
Helix 39	AE3	B	773	786	Right-handed alpha
Helix 40	AE4	B	787	800	Right-handed alpha
Helix 41	AE5	B	807	811	Right-handed 310
Helix 42	AE6	B	849	864	Right-handed alpha
Helix 43	AE7	C	494	509	Right-handed alpha
Helix 44	AE8	C	523	534	Right-handed alpha
Helix 45	AE9	C	535	542	Right-handed 310
Helix 46	AF1	C	555	571	Right-handed alpha
Helix 47	AF2	C	572	577	Right-handed 310
Helix 48	AF3	C	593	598	Right-handed 310
Helix 49	AF4	C	600	618	Right-handed alpha
Helix 50	AF5	C	627	635	Right-handed alpha
Helix 51	AF6	C	640	648	Right-handed alpha
Helix 52	AF7	C	648	660	Right-handed alpha
Helix 53	AF8	C	663	667	Right-handed 310
Helix 54	AF9	C	700	715	Right-handed alpha
Helix 55	AG1	C	717	732	Right-handed alpha
Helix 56	AG2	C	733	738	Right-handed 310
Helix 57	AG3	C	741	751	Right-handed alpha
Helix 58	AG4	C	756	763	Right-handed alpha
Helix 59	AG5	C	773	786	Right-handed alpha
Helix 60	AG6	C	787	800	Right-handed alpha
Helix 61	AG7	C	807	811	Right-handed 310
Helix 62	AG8	C	837	839	Right-handed 310
Helix 63	AG9	C	849	864	Right-handed alpha
Helix 64	AH1	D	494	508	Right-handed alpha
Helix 65	AH2	D	520	522	Right-handed 310
Helix 66	AH3	D	523	534	Right-handed alpha
Helix 67	AH4	D	536	542	Right-handed 310
Helix 68	AH5	D	555	571	Right-handed alpha
Helix 69	AH6	D	572	577	Right-handed 310
Helix 70	AH7	D	593	598	Right-handed 310
Helix 71	AH8	D	600	618	Right-handed alpha
Helix 72	AH9	D	627	635	Right-handed alpha
Helix 73	AI1	D	640	648	Right-handed alpha
Helix 74	AI2	D	648	661	Right-handed alpha
Helix 75	AI3	D	690	694	Right-handed 310
Helix 76	AI4	D	700	715	Right-handed alpha
Helix 77	AI5	D	717	732	Right-handed alpha
Helix 78	AI6	D	733	738	Right-handed 310
Helix 79	AI7	D	741	751	Right-handed alpha
Helix 80	AI8	D	756	763	Right-handed alpha
Helix 81	AI9	D	773	786	Right-handed alpha
Helix 82	AJ1	D	787	800	Right-handed alpha
Helix 83	AJ2	D	807	811	Right-handed 310
Helix 84	AJ3	D	837	839	Right-handed 310
Helix 85	AJ4	D	849	864	Right-handed alpha
Helix 86	AJ5	E	7	17	Right-handed alpha
Helix 87	AJ6	F	6	17	Right-handed alpha
Helix 88	AJ7	G	8	17	Right-handed alpha
Helix 89	AJ8	H	8	17	Right-handed alpha

There are 20 sheets in PDB entry 8EI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	519	first strand
Strand 2	A	543	548	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	583	first strand
Strand 2	A	587	591	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	678	first strand
Strand 2	A	681	686	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	767	first strand
Strand 2	A	822	824	parallel
Strand 3	A	841	843	parallel
Strand 4	A	834	836	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	813	814	first strand
Strand 2	A	817	818	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	514	519	first strand
Strand 2	B	543	548	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	583	first strand
Strand 2	B	587	591	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	678	first strand
Strand 2	B	681	686	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	767	first strand
Strand 2	B	822	824	parallel
Strand 3	B	841	843	parallel
Strand 4	B	834	836	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	813	814	first strand
Strand 2	B	817	818	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	514	519	first strand
Strand 2	C	543	548	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	579	583	first strand
Strand 2	C	587	591	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	673	678	first strand
Strand 2	C	681	686	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	767	first strand
Strand 2	C	822	824	parallel
Strand 3	C	841	843	parallel
Strand 4	C	834	836	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	813	814	first strand
Strand 2	C	817	818	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	514	519	first strand
Strand 2	D	543	548	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	579	583	first strand
Strand 2	D	587	591	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	673	677	first strand
Strand 2	D	682	686	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	765	767	first strand
Strand 2	D	822	824	parallel
Strand 3	D	841	843	parallel
Strand 4	D	834	836	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	813	814	first strand
Strand 2	D	817	818	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EI5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EI5