Analysis of interatomic Contacts of Structural Units in PDB entry:
8EI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EI8 entry

There are 2 chains in PDB entry 8EI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 492GLU 865
B
 ASP 1GLN 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8EI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
494 508Right-handed alpha
Helix 2
AA2
A
523 535Right-handed alpha
Helix 3
AA3
A
538 542Right-handed 310
Helix 4
AA4
A
555 571Right-handed alpha
Helix 5
AA5
A
572 577Right-handed 310
Helix 6
AA6
A
594 598Right-handed 310
Helix 7
AA7
A
600 618Right-handed alpha
Helix 8
AA8
A
627 635Right-handed alpha
Helix 9
AA9
A
640 648Right-handed alpha
Helix 10
AB1
A
648 660Right-handed alpha
Helix 11
AB2
A
700 713Right-handed alpha
Helix 12
AB3
A
717 732Right-handed alpha
Helix 13
AB4
A
733 738Right-handed 310
Helix 14
AB5
A
741 751Right-handed alpha
Helix 15
AB6
A
756 763Right-handed alpha
Helix 16
AB7
A
773 786Right-handed alpha
Helix 17
AB8
A
787 800Right-handed alpha
Helix 18
AB9
A
849 864Right-handed alpha
Helix 19
AC1
B
2 17Right-handed alpha
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There are 5 sheets in PDB entry 8EI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 519first strand
Strand 2
A
543 548parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 581first strand
Strand 2
A
589 591anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
673 678first strand
Strand 2
A
681 686anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
821 824parallel
Strand 3
A
841 843parallel
Strand 4
A
834 836anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 814first strand
Strand 2
A
817 818anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il