Analysis of interatomic Contacts of Structural Units in PDB entry:
8EII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EII entry

There are 4 chains in PDB entry 8EII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 414	GLU 853
B	ARG 410	GLU 853
C	GLU 413	GLU 853
D	ALA 569	GLU 853

There are 56 helices in PDB entry 8EII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	416	426	Right-handed alpha
Helix 2	AA2	A	430	434	Right-handed 310
Helix 3	AA3	A	455	466	Right-handed alpha
Helix 4	AA4	A	511	516	Right-handed alpha
Helix 5	AA5	A	541	552	Right-handed alpha
Helix 6	AA6	A	585	595	Right-handed alpha
Helix 7	AA7	A	607	618	Right-handed alpha
Helix 8	AA8	A	627	631	Right-handed 310
Helix 9	AA9	A	632	633	Right-handed 310
Helix 10	AB1	A	634	640	Right-handed alpha
Helix 11	AB2	A	666	671	Right-handed 310
Helix 12	AB3	A	672	683	Right-handed alpha
Helix 13	AB4	A	703	715	Right-handed alpha
Helix 14	AB5	A	724	726	Right-handed 310
Helix 15	AB6	A	755	760	Right-handed 310
Helix 16	AB7	A	804	809	Right-handed alpha
Helix 17	AB8	A	822	827	Right-handed alpha
Helix 18	AB9	A	829	833	Right-handed 310
Helix 19	AC1	A	835	843	Right-handed alpha
Helix 20	AC2	A	844	847	Right-handed 310
Helix 21	AC3	B	416	426	Right-handed alpha
Helix 22	AC4	B	455	463	Right-handed alpha
Helix 23	AC5	B	500	508	Right-handed alpha
Helix 24	AC6	B	511	519	Right-handed alpha
Helix 25	AC7	B	541	550	Right-handed alpha
Helix 26	AC8	B	585	595	Right-handed alpha
Helix 27	AC9	B	607	618	Right-handed alpha
Helix 28	AD1	B	627	631	Right-handed 310
Helix 29	AD2	B	632	640	Right-handed alpha
Helix 30	AD3	B	666	670	Right-handed 310
Helix 31	AD4	B	671	682	Right-handed alpha
Helix 32	AD5	B	703	715	Right-handed alpha
Helix 33	AD6	B	756	760	Right-handed 310
Helix 34	AD7	B	801	809	Right-handed alpha
Helix 35	AD8	B	822	832	Right-handed alpha
Helix 36	AD9	B	835	844	Right-handed alpha
Helix 37	AE1	B	845	849	Right-handed 310
Helix 38	AE2	C	416	426	Right-handed alpha
Helix 39	AE3	C	455	465	Right-handed alpha
Helix 40	AE4	C	501	506	Right-handed alpha
Helix 41	AE5	C	511	517	Right-handed alpha
Helix 42	AE6	C	541	551	Right-handed alpha
Helix 43	AE7	C	588	594	Right-handed alpha
Helix 44	AE8	C	627	631	Right-handed 310
Helix 45	AE9	C	632	640	Right-handed alpha
Helix 46	AF1	C	668	683	Right-handed alpha
Helix 47	AF2	C	703	715	Right-handed alpha
Helix 48	AF3	C	836	844	Right-handed alpha
Helix 49	AF4	C	845	849	Right-handed 310
Helix 50	AF5	D	585	594	Right-handed alpha
Helix 51	AF6	D	627	631	Right-handed 310
Helix 52	AF7	D	632	640	Right-handed alpha
Helix 53	AF8	D	667	682	Right-handed alpha
Helix 54	AF9	D	703	715	Right-handed alpha
Helix 55	AG1	D	835	844	Right-handed alpha
Helix 56	AG2	D	845	850	Right-handed 310

There are 15 sheets in PDB entry 8EII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	453	454	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	604	first strand
Strand 2	A	575	580	parallel
Strand 3	A	644	647	parallel
Strand 4	A	693	694	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	697	699	first strand
Strand 2	A	732	735	anti-parallel
Strand 3	A	719	722	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	765	766	first strand
Strand 2	A	791	793	anti-parallel
Strand 3	A	796	798	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	453	454	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	489	first strand
Strand 2	B	498	499	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	532	533	first strand
Strand 2	B	536	537	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	625	first strand
Strand 2	B	598	604	parallel
Strand 3	B	575	580	parallel
Strand 4	B	644	647	parallel
Strand 5	B	693	699	parallel
Strand 6	B	732	737	anti-parallel
Strand 7	B	719	722	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	765	766	first strand
Strand 2	B	791	792	anti-parallel
Strand 3	B	797	798	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	446	first strand
Strand 2	C	453	454	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	488	489	first strand
Strand 2	C	498	499	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	601	first strand
Strand 2	C	575	578	parallel
Strand 3	C	644	645	parallel
Strand 4	C	693	694	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	697	698	first strand
Strand 2	C	733	735	anti-parallel
Strand 3	C	719	721	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	598	603	first strand
Strand 2	D	575	579	parallel
Strand 3	D	645	646	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	720	first strand
Strand 2	D	734	735	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EII

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EII