Analysis of interatomic Contacts of Structural Units in PDB entry:
8EIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EIJ entry

There are 3 chains in PDB entry 8EIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 415GLU 853
B
 ASP 412GLU 853
D
 ALA 570PHE 850
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8EIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
416 425Right-handed alpha
Helix 2
AA2
A
430 434Right-handed 310
Helix 3
AA3
A
455 466Right-handed alpha
Helix 4
AA4
A
501 508Right-handed alpha
Helix 5
AA5
A
512 519Right-handed alpha
Helix 6
AA6
A
541 552Right-handed alpha
Helix 7
AA7
A
585 595Right-handed alpha
Helix 8
AA8
A
607 617Right-handed alpha
Helix 9
AA9
A
627 631Right-handed 310
Helix 10
AB1
A
632 640Right-handed alpha
Helix 11
AB2
A
667 669Right-handed 310
Helix 12
AB3
A
670 683Right-handed alpha
Helix 13
AB4
A
703 708Right-handed alpha
Helix 14
AB5
A
708 714Right-handed alpha
Helix 15
AB6
A
724 726Right-handed 310
Helix 16
AB7
A
755 759Right-handed 310
Helix 17
AB8
A
801 809Right-handed alpha
Helix 18
AB9
A
822 829Right-handed alpha
Helix 19
AC1
A
835 843Right-handed alpha
Helix 20
AC2
A
844 849Right-handed 310
Helix 21
AC3
B
416 426Right-handed alpha
Helix 22
AC4
B
430 434Right-handed 310
Helix 23
AC5
B
455 460Right-handed alpha
Helix 24
AC6
B
461 466Right-handed alpha
Helix 25
AC7
B
500 509Right-handed alpha
Helix 26
AC8
B
511 519Right-handed alpha
Helix 27
AC9
B
541 550Right-handed alpha
Helix 28
AD1
B
585 595Right-handed alpha
Helix 29
AD2
B
607 618Right-handed alpha
Helix 30
AD3
B
627 631Right-handed 310
Helix 31
AD4
B
632 640Right-handed alpha
Helix 32
AD5
B
666 669Right-handed 310
Helix 33
AD6
B
670 683Right-handed alpha
Helix 34
AD7
B
703 715Right-handed alpha
Helix 35
AD8
B
724 726Right-handed 310
Helix 36
AD9
B
755 760Right-handed 310
Helix 37
AE1
B
801 809Right-handed alpha
Helix 38
AE2
B
822 832Right-handed alpha
Helix 39
AE3
B
835 844Right-handed alpha
Helix 40
AE4
B
845 849Right-handed 310
Helix 41
AE5
D
585 594Right-handed alpha
Helix 42
AE6
D
632 640Right-handed alpha
Helix 43
AE7
D
667 683Right-handed alpha
Helix 44
AE8
D
703 715Right-handed alpha
Helix 45
AE9
D
836 843Right-handed alpha
Helix 46
AF1
D
844 848Right-handed 310
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There are 7 sheets in PDB entry 8EIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 489first strand
Strand 2
A
498 500anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 601first strand
Strand 2
A
576 578parallel
Strand 3
A
644 645parallel
Strand 4
A
693 699parallel
Strand 5
A
732 737anti-parallel
Strand 6
A
719 722anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 766first strand
Strand 2
A
791 793anti-parallel
Strand 3
A
796 798anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
623 625first strand
Strand 2
B
598 604parallel
Strand 3
B
575 580parallel
Strand 4
B
644 646parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
695 699first strand
Strand 2
B
732 737anti-parallel
Strand 3
B
719 722anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
765 766first strand
Strand 2
B
791 793anti-parallel
Strand 3
B
796 798anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
697 699first strand
Strand 2
D
733 735anti-parallel
Strand 3
D
719 721anti-parallel
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