Analysis of interatomic Contacts of Structural Units in PDB entry:
8EIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EIL entry

There are 4 chains in PDB entry 8EIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 496ASP 679
B
 HIS 496VAL 678
C
 SER 495GLY 677
D
 SER 495GLY 677
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8EIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
537 555Right-handed alpha
Helix 2
AA2
A
556 558Right-handed 310
Helix 3
AA3
A
563 565Right-handed 310
Helix 4
AA4
A
585 599Right-handed alpha
Helix 5
AA5
A
623 634Right-handed alpha
Helix 6
AA6
A
644 652Right-handed 310
Helix 7
AA7
A
653 658Right-handed alpha
Helix 8
AA8
A
667 677Right-handed alpha
Helix 9
AA9
B
537 554Right-handed alpha
Helix 10
AB1
B
555 558Right-handed 310
Helix 11
AB2
B
585 599Right-handed alpha
Helix 12
AB3
B
623 634Right-handed alpha
Helix 13
AB4
B
644 652Right-handed 310
Helix 14
AB5
B
653 658Right-handed alpha
Helix 15
AB6
B
667 677Right-handed alpha
Helix 16
AB7
C
537 555Right-handed alpha
Helix 17
AB8
C
556 558Right-handed 310
Helix 18
AB9
C
585 599Right-handed alpha
Helix 19
AC1
C
623 634Right-handed alpha
Helix 20
AC2
C
644 652Right-handed 310
Helix 21
AC3
C
653 658Right-handed alpha
Helix 22
AC4
C
667 677Right-handed alpha
Helix 23
AC5
D
537 555Right-handed alpha
Helix 24
AC6
D
556 558Right-handed 310
Helix 25
AC7
D
563 567Right-handed 310
Helix 26
AC8
D
585 599Right-handed alpha
Helix 27
AC9
D
623 634Right-handed alpha
Helix 28
AD1
D
644 652Right-handed 310
Helix 29
AD2
D
653 658Right-handed alpha
Helix 30
AD3
D
667 677Right-handed alpha
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There are 8 sheets in PDB entry 8EIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 532first strand
Strand 2
A
567 575parallel
Strand 3
A
513 524anti-parallel
Strand 4
A
501 507anti-parallel
Strand 5
A
606 608parallel
Strand 6
A
638 642parallel
Strand 7
A
661 665parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 612first strand
Strand 2
A
618 619anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
529 532first strand
Strand 2
B
567 575parallel
Strand 3
B
513 524anti-parallel
Strand 4
B
501 507anti-parallel
Strand 5
B
606 608parallel
Strand 6
B
638 642parallel
Strand 7
B
661 665parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 612first strand
Strand 2
B
618 619anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
528 532first strand
Strand 2
C
568 575parallel
Strand 3
C
513 523anti-parallel
Strand 4
C
501 507anti-parallel
Strand 5
C
606 608parallel
Strand 6
C
638 642parallel
Strand 7
C
661 665parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
611 612first strand
Strand 2
C
618 619anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
529 532first strand
Strand 2
D
568 575parallel
Strand 3
D
513 523anti-parallel
Strand 4
D
501 507anti-parallel
Strand 5
D
606 608parallel
Strand 6
D
638 642parallel
Strand 7
D
661 665parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
611 612first strand
Strand 2
D
618 619anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il