Analysis of interatomic Contacts of Structural Units in PDB entry:
8EIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EIM entry

There are 2 chains in PDB entry 8EIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 68ASP 534
B
 SER 69ASP 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8EIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 83Right-handed alpha
Helix 2
AA2
A
125 128Right-handed 310
Helix 3
AA3
A
129 144Right-handed alpha
Helix 4
AA4
A
146 150Right-handed 310
Helix 5
AA5
A
157 172Right-handed alpha
Helix 6
AA6
A
181 197Right-handed alpha
Helix 7
AA7
A
209 220Right-handed alpha
Helix 8
AA8
A
230 240Right-handed alpha
Helix 9
AA9
A
263 275Right-handed alpha
Helix 10
AB1
A
295 300Right-handed alpha
Helix 11
AB2
A
301 309Right-handed alpha
Helix 12
AB3
A
323 328Right-handed alpha
Helix 13
AB4
A
349 360Right-handed alpha
Helix 14
AB5
A
360 365Right-handed alpha
Helix 15
AB6
A
370 386Right-handed alpha
Helix 16
AB7
A
387 408Right-handed alpha
Helix 17
AB8
A
426 442Right-handed alpha
Helix 18
AB9
A
469 487Right-handed alpha
Helix 19
AC1
A
491 497Right-handed alpha
Helix 20
AC2
A
517 522Right-handed alpha
Helix 21
AC3
A
523 528Right-handed 310
Helix 22
AC4
A
529 534Right-handed 310
Helix 23
AC5
B
72 85Right-handed alpha
Helix 24
AC6
B
125 128Right-handed 310
Helix 25
AC7
B
129 144Right-handed alpha
Helix 26
AC8
B
146 150Right-handed 310
Helix 27
AC9
B
157 172Right-handed alpha
Helix 28
AD1
B
181 197Right-handed alpha
Helix 29
AD2
B
209 220Right-handed alpha
Helix 30
AD3
B
230 240Right-handed alpha
Helix 31
AD4
B
263 275Right-handed alpha
Helix 32
AD5
B
295 300Right-handed alpha
Helix 33
AD6
B
301 309Right-handed alpha
Helix 34
AD7
B
323 328Right-handed alpha
Helix 35
AD8
B
349 360Right-handed alpha
Helix 36
AD9
B
360 365Right-handed alpha
Helix 37
AE1
B
370 386Right-handed alpha
Helix 38
AE2
B
388 409Right-handed alpha
Helix 39
AE3
B
426 442Right-handed alpha
Helix 40
AE4
B
469 487Right-handed alpha
Helix 41
AE5
B
517 522Right-handed alpha
Helix 42
AE6
B
523 528Right-handed 310
Helix 43
AE7
B
529 534Right-handed 310
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There are 7 sheets in PDB entry 8EIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
98 101anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
443 444parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
344 348anti-parallel
Strand 3
A
330 334anti-parallel
Strand 4
A
276 281parallel
Strand 5
A
247 252parallel
Strand 6
A
201 205parallel
Strand 7
A
222 226parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 423first strand
Strand 2
A
459 462anti-parallel
Strand 3
A
446 448anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
443 444parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
344 348anti-parallel
Strand 3
B
330 334anti-parallel
Strand 4
B
276 281parallel
Strand 5
B
247 252parallel
Strand 6
B
201 205parallel
Strand 7
B
222 226parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 423first strand
Strand 2
B
459 462anti-parallel
Strand 3
B
446 448anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il