Analysis of interatomic Contacts of Structural Units in PDB entry:
8EIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EIP entry

There are 4 chains in PDB entry 8EIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 10	LEU 373
B	THR 10	PHE 379
C	THR 10	LEU 373
D	SER 11	GLU 375

There are 33 helices in PDB entry 8EIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	73	Right-handed alpha
Helix 2	AA2	A	89	92	Right-handed 310
Helix 3	AA3	A	133	151	Right-handed alpha
Helix 4	AA4	A	156	168	Right-handed alpha
Helix 5	AA5	A	193	195	Right-handed 310
Helix 6	AA6	A	198	205	Right-handed alpha
Helix 7	AA7	A	220	236	Right-handed alpha
Helix 8	AA8	A	259	277	Right-handed alpha
Helix 9	AA9	B	54	73	Right-handed alpha
Helix 10	AB1	B	89	92	Right-handed 310
Helix 11	AB2	B	133	151	Right-handed alpha
Helix 12	AB3	B	156	168	Right-handed alpha
Helix 13	AB4	B	193	195	Right-handed 310
Helix 14	AB5	B	198	205	Right-handed alpha
Helix 15	AB6	B	220	236	Right-handed alpha
Helix 16	AB7	B	259	277	Right-handed alpha
Helix 17	AB8	C	54	73	Right-handed alpha
Helix 18	AB9	C	89	92	Right-handed 310
Helix 19	AC1	C	124	129	Right-handed 310
Helix 20	AC2	C	133	151	Right-handed alpha
Helix 21	AC3	C	156	168	Right-handed alpha
Helix 22	AC4	C	193	195	Right-handed 310
Helix 23	AC5	C	198	205	Right-handed alpha
Helix 24	AC6	C	220	236	Right-handed alpha
Helix 25	AC7	C	259	277	Right-handed alpha
Helix 26	AC8	D	54	73	Right-handed alpha
Helix 27	AC9	D	89	92	Right-handed 310
Helix 28	AD1	D	133	151	Right-handed alpha
Helix 29	AD2	D	156	168	Right-handed alpha
Helix 30	AD3	D	193	195	Right-handed 310
Helix 31	AD4	D	198	205	Right-handed alpha
Helix 32	AD5	D	220	236	Right-handed alpha
Helix 33	AD6	D	259	277	Right-handed alpha

There are 16 sheets in PDB entry 8EIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	28	33	anti-parallel
Strand 3	A	79	83	anti-parallel
Strand 4	A	42	47	parallel
Strand 5	A	174	181	parallel
Strand 6	A	246	254	parallel
Strand 7	A	187	191	anti-parallel
Strand 8	A	210	213	parallel
Strand 9	A	295	297	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	95	first strand
Strand 2	A	98	99	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	363	368	anti-parallel
Strand 3	A	347	351	anti-parallel
Strand 4	A	321	322	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	342	first strand
Strand 2	A	327	332	anti-parallel
Strand 3	A	310	314	anti-parallel
Strand 4	A	357	358	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	17	first strand
Strand 2	B	28	33	anti-parallel
Strand 3	B	79	83	anti-parallel
Strand 4	B	42	47	parallel
Strand 5	B	174	181	parallel
Strand 6	B	246	254	parallel
Strand 7	B	187	191	anti-parallel
Strand 8	B	210	213	parallel
Strand 9	B	295	297	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	95	first strand
Strand 2	B	98	99	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	305	first strand
Strand 2	B	363	368	anti-parallel
Strand 3	B	347	351	anti-parallel
Strand 4	B	321	322	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	342	first strand
Strand 2	B	327	332	anti-parallel
Strand 3	B	310	314	anti-parallel
Strand 4	B	357	358	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	28	33	anti-parallel
Strand 3	C	79	83	anti-parallel
Strand 4	C	42	47	parallel
Strand 5	C	174	181	parallel
Strand 6	C	246	254	parallel
Strand 7	C	187	191	anti-parallel
Strand 8	C	210	213	parallel
Strand 9	C	295	297	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	95	first strand
Strand 2	C	98	99	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	363	368	anti-parallel
Strand 3	C	347	351	anti-parallel
Strand 4	C	321	322	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	342	first strand
Strand 2	C	327	332	anti-parallel
Strand 3	C	310	314	anti-parallel
Strand 4	C	357	358	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	17	first strand
Strand 2	D	28	34	anti-parallel
Strand 3	D	79	83	anti-parallel
Strand 4	D	42	47	parallel
Strand 5	D	174	181	parallel
Strand 6	D	246	254	parallel
Strand 7	D	187	191	anti-parallel
Strand 8	D	210	213	parallel
Strand 9	D	295	297	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	95	first strand
Strand 2	D	98	99	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	305	first strand
Strand 2	D	363	368	anti-parallel
Strand 3	D	347	351	anti-parallel
Strand 4	D	321	322	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	342	first strand
Strand 2	D	327	332	anti-parallel
Strand 3	D	310	314	anti-parallel
Strand 4	D	357	358	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EIP