Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJ0 entry

There are 8 chains in PDB entry 8EJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 8	ASP 126
A	THR 128	HIS 575
C	VAL 8	ASP 126
C	THR 128	HIS 575
E	VAL 8	ASP 126
E	THR 128	HIS 575
G	VAL 8	ASP 126
G	THR 128	HIS 575

There are120 helices in PDB entry 8EJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	16	Right-handed alpha
Helix 2	AA2	A	19	28	Right-handed alpha
Helix 3	AA3	A	29	33	Right-handed 310
Helix 4	AA4	A	35	40	Right-handed 310
Helix 5	AA5	A	55	59	Right-handed 310
Helix 6	AA6	A	60	75	Right-handed alpha
Helix 7	AA7	A	95	98	Right-handed 310
Helix 8	AA8	A	99	114	Right-handed alpha
Helix 9	AA9	A	127	138	Right-handed alpha
Helix 10	AB1	A	164	176	Right-handed alpha
Helix 11	AB2	A	180	187	Right-handed alpha
Helix 12	AB3	A	187	192	Right-handed alpha
Helix 13	AB4	A	202	215	Right-handed alpha
Helix 14	AB5	A	228	249	Right-handed alpha
Helix 15	AB6	A	251	255	Right-handed 310
Helix 16	AB7	A	257	271	Right-handed alpha
Helix 17	AB8	A	275	289	Right-handed alpha
Helix 18	AB9	A	293	302	Right-handed alpha
Helix 19	AC1	A	317	325	Right-handed alpha
Helix 20	AC2	A	325	333	Right-handed alpha
Helix 21	AC3	A	394	397	Right-handed 310
Helix 22	AC4	A	398	401	Right-handed 310
Helix 23	AC5	A	413	422	Right-handed alpha
Helix 24	AC6	A	456	461	Right-handed alpha
Helix 25	AC7	A	490	494	Right-handed 310
Helix 26	AC8	A	495	500	Right-handed 310
Helix 27	AC9	A	520	530	Right-handed alpha
Helix 28	AD1	A	540	550	Right-handed alpha
Helix 29	AD2	A	559	563	Right-handed 310
Helix 30	AD3	C	11	16	Right-handed alpha
Helix 31	AD4	C	19	28	Right-handed alpha
Helix 32	AD5	C	29	33	Right-handed 310
Helix 33	AD6	C	35	40	Right-handed 310
Helix 34	AD7	C	55	59	Right-handed 310
Helix 35	AD8	C	60	75	Right-handed alpha
Helix 36	AD9	C	95	98	Right-handed 310
Helix 37	AE1	C	99	113	Right-handed alpha
Helix 38	AE2	C	127	138	Right-handed alpha
Helix 39	AE3	C	164	176	Right-handed alpha
Helix 40	AE4	C	180	187	Right-handed alpha
Helix 41	AE5	C	187	192	Right-handed alpha
Helix 42	AE6	C	202	214	Right-handed alpha
Helix 43	AE7	C	228	249	Right-handed alpha
Helix 44	AE8	C	251	256	Right-handed alpha
Helix 45	AE9	C	257	271	Right-handed alpha
Helix 46	AF1	C	275	289	Right-handed alpha
Helix 47	AF2	C	293	301	Right-handed alpha
Helix 48	AF3	C	317	324	Right-handed alpha
Helix 49	AF4	C	325	334	Right-handed alpha
Helix 50	AF5	C	394	397	Right-handed 310
Helix 51	AF6	C	398	401	Right-handed 310
Helix 52	AF7	C	413	422	Right-handed alpha
Helix 53	AF8	C	456	461	Right-handed alpha
Helix 54	AF9	C	490	494	Right-handed 310
Helix 55	AG1	C	495	500	Right-handed 310
Helix 56	AG2	C	520	528	Right-handed alpha
Helix 57	AG3	C	540	550	Right-handed alpha
Helix 58	AG4	C	552	556	Right-handed 310
Helix 59	AG5	C	559	563	Right-handed 310
Helix 60	AG6	E	10	14	Right-handed 310
Helix 61	AG7	E	19	28	Right-handed alpha
Helix 62	AG8	E	29	33	Right-handed 310
Helix 63	AG9	E	35	40	Right-handed 310
Helix 64	AH1	E	55	59	Right-handed 310
Helix 65	AH2	E	60	76	Right-handed alpha
Helix 66	AH3	E	95	98	Right-handed 310
Helix 67	AH4	E	99	114	Right-handed alpha
Helix 68	AH5	E	127	138	Right-handed alpha
Helix 69	AH6	E	164	176	Right-handed alpha
Helix 70	AH7	E	180	186	Right-handed alpha
Helix 71	AH8	E	187	192	Right-handed alpha
Helix 72	AH9	E	202	214	Right-handed alpha
Helix 73	AI1	E	228	249	Right-handed alpha
Helix 74	AI2	E	251	256	Right-handed alpha
Helix 75	AI3	E	257	271	Right-handed alpha
Helix 76	AI4	E	275	289	Right-handed alpha
Helix 77	AI5	E	293	302	Right-handed alpha
Helix 78	AI6	E	317	325	Right-handed alpha
Helix 79	AI7	E	325	334	Right-handed alpha
Helix 80	AI8	E	349	355	Right-handed alpha
Helix 81	AI9	E	394	397	Right-handed 310
Helix 82	AJ1	E	398	401	Right-handed 310
Helix 83	AJ2	E	413	422	Right-handed alpha
Helix 84	AJ3	E	456	461	Right-handed alpha
Helix 85	AJ4	E	490	494	Right-handed 310
Helix 86	AJ5	E	495	500	Right-handed 310
Helix 87	AJ6	E	520	531	Right-handed alpha
Helix 88	AJ7	E	540	548	Right-handed alpha
Helix 89	AJ8	E	559	563	Right-handed 310
Helix 90	AJ9	G	11	16	Right-handed alpha
Helix 91	AK1	G	19	28	Right-handed alpha
Helix 92	AK2	G	29	33	Right-handed 310
Helix 93	AK3	G	35	40	Right-handed 310
Helix 94	AK4	G	55	59	Right-handed 310
Helix 95	AK5	G	60	75	Right-handed alpha
Helix 96	AK6	G	95	98	Right-handed 310
Helix 97	AK7	G	99	114	Right-handed alpha
Helix 98	AK8	G	127	138	Right-handed alpha
Helix 99	AK9	G	164	175	Right-handed alpha
Helix 100	AL1	G	180	187	Right-handed alpha
Helix 101	AL2	G	187	192	Right-handed alpha
Helix 102	AL3	G	202	214	Right-handed alpha
Helix 103	AL4	G	228	249	Right-handed alpha
Helix 104	AL5	G	251	256	Right-handed alpha
Helix 105	AL6	G	257	272	Right-handed alpha
Helix 106	AL7	G	275	289	Right-handed alpha
Helix 107	AL8	G	293	301	Right-handed alpha
Helix 108	AL9	G	317	325	Right-handed alpha
Helix 109	AM1	G	325	334	Right-handed alpha
Helix 110	AM2	G	335	337	Right-handed 310
Helix 111	AM3	G	393	397	Right-handed 310
Helix 112	AM4	G	398	401	Right-handed 310
Helix 113	AM5	G	413	422	Right-handed alpha
Helix 114	AM6	G	456	461	Right-handed alpha
Helix 115	AM7	G	490	494	Right-handed 310
Helix 116	AM8	G	495	500	Right-handed 310
Helix 117	AM9	G	520	531	Right-handed alpha
Helix 118	AN1	G	540	550	Right-handed alpha
Helix 119	AN2	G	552	556	Right-handed 310
Helix 120	AN3	G	559	563	Right-handed 310

There are 14 sheets in PDB entry 8EJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	44	49	parallel
Strand 3	A	118	123	parallel
Strand 4	A	143	147	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	156	first strand
Strand 2	A	159	161	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	383	first strand
Strand 2	A	386	392	anti-parallel
Strand 3	A	483	488	anti-parallel
Strand 4	A	469	471	parallel
Strand 5	A	433	436	parallel
Strand 6	A	403	411	parallel
Strand 7	A	505	509	anti-parallel
Strand 8	A	514	517	anti-parallel
Strand 9	A	379	383	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	44	49	parallel
Strand 3	C	118	123	parallel
Strand 4	C	143	147	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	159	161	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	379	381	first strand
Strand 2	C	389	392	anti-parallel
Strand 3	C	483	488	anti-parallel
Strand 4	C	469	471	parallel
Strand 5	C	433	436	parallel
Strand 6	C	403	411	parallel
Strand 7	C	505	509	anti-parallel
Strand 8	C	514	517	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	83	first strand
Strand 2	E	44	49	parallel
Strand 3	E	118	123	parallel
Strand 4	E	143	147	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	156	first strand
Strand 2	E	159	161	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	379	383	first strand
Strand 2	E	386	392	anti-parallel
Strand 3	E	483	485	anti-parallel
Strand 4	E	468	471	parallel
Strand 5	E	433	436	parallel
Strand 6	E	403	411	parallel
Strand 7	E	505	509	anti-parallel
Strand 8	E	514	517	anti-parallel
Strand 9	E	379	383	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	83	first strand
Strand 2	G	44	49	parallel
Strand 3	G	118	123	parallel
Strand 4	G	143	147	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	156	first strand
Strand 2	G	159	161	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	379	381	first strand
Strand 2	G	390	392	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	406	first strand
Strand 2	G	506	509	anti-parallel
Strand 3	G	514	517	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	408	411	first strand
Strand 2	G	433	436	parallel
Strand 3	G	469	471	parallel
Strand 4	G	483	484	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ0