Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EJ1 entry

There is 1 chain in PDB entry 8EJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 1436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8EJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
19 30Right-handed alpha
Helix 3
AA3
A
33 37Right-handed 310
Helix 4
AA4
A
45 64Right-handed alpha
Helix 5
AA5
A
68 77Right-handed alpha
Helix 6
AA6
A
78 107Right-handed alpha
Helix 7
AA7
A
108 108Right-handed 310
Helix 8
AA8
A
118 119Right-handed 310
Helix 9
AA9
A
120 165Right-handed alpha
Helix 10
AB1
A
168 175Right-handed alpha
Helix 11
AB2
A
176 179Right-handed 310
Helix 12
AB3
A
180 187Right-handed alpha
Helix 13
AB4
A
189 194Right-handed alpha
Helix 14
AB5
A
195 198Right-handed 310
Helix 15
AB6
A
199 217Right-handed alpha
Helix 16
AB7
A
222 268Right-handed alpha
Helix 17
AB8
A
268 276Right-handed alpha
Helix 18
AB9
A
277 312Right-handed alpha
Helix 19
AC1
A
313 329Right-handed alpha
Helix 20
AC2
A
332 352Right-handed alpha
Helix 21
AC3
A
354 375Right-handed alpha
Helix 22
AC4
A
463 472Right-handed alpha
Helix 23
AC5
A
501 507Right-handed alpha
Helix 24
AC6
A
513 524Right-handed alpha
Helix 25
AC7
A
525 530Right-handed alpha
Helix 26
AC8
A
531 533Right-handed 310
Helix 27
AC9
A
549 564Right-handed alpha
Helix 28
AD1
A
580 590Right-handed alpha
Helix 29
AD2
A
606 613Right-handed alpha
Helix 30
AD3
A
629 635Right-handed alpha
Helix 31
AD4
A
845 854Right-handed alpha
Helix 32
AD5
A
858 885Right-handed alpha
Helix 33
AD6
A
912 922Right-handed alpha
Helix 34
AD7
A
922 927Right-handed alpha
Helix 35
AD8
A
933 958Right-handed alpha
Helix 36
AD9
A
960 965Right-handed alpha
Helix 37
AE1
A
969 985Right-handed alpha
Helix 38
AE2
A
985 1012Right-handed alpha
Helix 39
AE3
A
1014 1061Right-handed alpha
Helix 40
AE4
A
1061 1069Right-handed alpha
Helix 41
AE5
A
1070 1121Right-handed alpha
Helix 42
AE6
A
1126 1138Right-handed alpha
Helix 43
AE7
A
1139 1168Right-handed alpha
Helix 44
AE8
A
1250 1259Right-handed alpha
Helix 45
AE9
A
1278 1284Right-handed alpha
Helix 46
AF1
A
1299 1305Right-handed alpha
Helix 47
AF2
A
1311 1323Right-handed alpha
Helix 48
AF3
A
1323 1328Right-handed alpha
Helix 49
AF4
A
1329 1331Right-handed 310
Helix 50
AF5
A
1339 1344Right-handed alpha
Helix 51
AF6
A
1347 1363Right-handed alpha
Helix 52
AF7
A
1377 1392Right-handed alpha
Helix 53
AF8
A
1426 1433Right-handed alpha
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There are 5 sheets in PDB entry 8EJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 398first strand
Strand 2
A
479 481anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
569 570parallel
Strand 3
A
600 603parallel
Strand 4
A
454 458parallel
Strand 5
A
616 619parallel
Strand 6
A
624 628anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1225 1234first strand
Strand 2
A
1210 1218anti-parallel
Strand 3
A
1267 1269anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1240 1241first strand
Strand 2
A
1412 1413parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1368 1370first strand
Strand 2
A
1398 1400parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il