Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJ3 entry

There are 9 chains in PDB entry 8EJ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	ASN 30	ASN 1169
D	LEU 2	ALA 1282
E	GLY 27	GLY 109
G	LYS 3	ARG 112
N	G 9	G 40
R	C 14	A 30
T	C 1	C 32

There are108 helices in PDB entry 8EJ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	151	155	Right-handed 310
Helix 4	AA4	A	205	219	Right-handed alpha
Helix 5	AA5	A	222	226	Right-handed 310
Helix 6	AA6	B	34	44	Right-handed alpha
Helix 7	AA7	B	73	81	Right-handed alpha
Helix 8	AA8	B	154	158	Right-handed 310
Helix 9	AA9	B	203	208	Right-handed alpha
Helix 10	AB1	B	212	217	Right-handed alpha
Helix 11	AB2	C	54	66	Right-handed alpha
Helix 12	AB3	C	67	77	Right-handed alpha
Helix 13	AB4	C	86	94	Right-handed alpha
Helix 14	AB5	C	118	126	Right-handed alpha
Helix 15	AB6	C	226	229	Right-handed 310
Helix 16	AB7	C	234	242	Right-handed alpha
Helix 17	AB8	C	244	252	Right-handed alpha
Helix 18	AB9	C	255	264	Right-handed alpha
Helix 19	AC1	C	269	282	Right-handed alpha
Helix 20	AC2	C	288	300	Right-handed alpha
Helix 21	AC3	C	309	317	Right-handed alpha
Helix 22	AC4	C	334	351	Right-handed alpha
Helix 23	AC5	C	380	403	Right-handed alpha
Helix 24	AC6	C	404	406	Right-handed 310
Helix 25	AC7	C	413	418	Right-handed alpha
Helix 26	AC8	C	420	432	Right-handed alpha
Helix 27	AC9	C	444	452	Right-handed alpha
Helix 28	AD1	C	476	480	Right-handed 310
Helix 29	AD2	C	532	537	Right-handed alpha
Helix 30	AD3	C	590	594	Right-handed 310
Helix 31	AD4	C	596	600	Right-handed 310
Helix 32	AD5	C	601	612	Right-handed alpha
Helix 33	AD6	C	613	615	Right-handed 310
Helix 34	AD7	C	632	637	Right-handed alpha
Helix 35	AD8	C	739	744	Right-handed alpha
Helix 36	AD9	C	900	904	Right-handed 310
Helix 37	AE1	C	928	943	Right-handed alpha
Helix 38	AE2	C	953	957	Right-handed 310
Helix 39	AE3	C	981	989	Right-handed alpha
Helix 40	AE4	C	1036	1040	Right-handed 310
Helix 41	AE5	C	1069	1080	Right-handed alpha
Helix 42	AE6	C	1081	1090	Right-handed alpha
Helix 43	AE7	C	1095	1109	Right-handed alpha
Helix 44	AE8	C	1119	1131	Right-handed alpha
Helix 45	AE9	D	3	7	Right-handed 310
Helix 46	AF1	D	16	24	Right-handed alpha
Helix 47	AF2	D	48	53	Right-handed alpha
Helix 48	AF3	D	67	71	Right-handed 310
Helix 49	AF4	D	84	90	Right-handed 310
Helix 50	AF5	D	114	119	Right-handed alpha
Helix 51	AF6	D	121	130	Right-handed alpha
Helix 52	AF7	D	140	146	Right-handed alpha
Helix 53	AF8	D	147	185	Right-handed alpha
Helix 54	AF9	D	190	229	Right-handed alpha
Helix 55	AG1	D	237	248	Right-handed alpha
Helix 56	AG2	D	257	267	Right-handed alpha
Helix 57	AG3	D	269	283	Right-handed alpha
Helix 58	AG4	D	286	305	Right-handed alpha
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	339	361	Right-handed alpha
Helix 61	AG7	D	363	383	Right-handed alpha
Helix 62	AG8	D	401	406	Right-handed 310
Helix 63	AG9	D	411	416	Right-handed alpha
Helix 64	AH1	D	445	452	Right-handed alpha
Helix 65	AH2	D	452	463	Right-handed alpha
Helix 66	AH3	D	468	478	Right-handed alpha
Helix 67	AH4	D	480	482	Right-handed 310
Helix 68	AH5	D	483	491	Right-handed alpha
Helix 69	AH6	D	505	507	Right-handed 310
Helix 70	AH7	D	525	529	Right-handed 310
Helix 71	AH8	D	548	558	Right-handed alpha
Helix 72	AH9	D	579	589	Right-handed alpha
Helix 73	AI1	D	614	625	Right-handed alpha
Helix 74	AI2	D	643	651	Right-handed alpha
Helix 75	AI3	D	656	660	Right-handed 310
Helix 76	AI4	D	667	675	Right-handed alpha
Helix 77	AI5	D	689	704	Right-handed alpha
Helix 78	AI6	D	705	728	Right-handed alpha
Helix 79	AI7	D	742	763	Right-handed alpha
Helix 80	AI8	D	766	793	Right-handed alpha
Helix 81	AI9	D	797	805	Right-handed alpha
Helix 82	AJ1	D	810	819	Right-handed alpha
Helix 83	AJ2	D	845	851	Right-handed alpha
Helix 84	AJ3	D	853	858	Right-handed alpha
Helix 85	AJ4	D	867	881	Right-handed alpha
Helix 86	AJ5	D	945	956	Right-handed alpha
Helix 87	AJ6	D	964	968	Right-handed 310
Helix 88	AJ7	D	976	980	Right-handed alpha
Helix 89	AJ8	D	994	1013	Right-handed alpha
Helix 90	AJ9	D	1023	1037	Right-handed alpha
Helix 91	AK1	D	1117	1125	Right-handed alpha
Helix 92	AK2	D	1126	1145	Right-handed alpha
Helix 93	AK3	D	1151	1162	Right-handed alpha
Helix 94	AK4	D	1170	1174	Right-handed 310
Helix 95	AK5	D	1183	1195	Right-handed alpha
Helix 96	AK6	D	1219	1227	Right-handed alpha
Helix 97	AK7	D	1228	1240	Right-handed alpha
Helix 98	AK8	D	1247	1255	Right-handed alpha
Helix 99	AK9	D	1260	1263	Right-handed 310
Helix 100	AL1	D	1264	1269	Right-handed alpha
Helix 101	AL2	D	1275	1282	Right-handed alpha
Helix 102	AL3	E	33	37	Right-handed 310
Helix 103	AL4	E	39	44	Right-handed alpha
Helix 104	AL5	E	49	70	Right-handed alpha
Helix 105	AL6	E	90	101	Right-handed alpha
Helix 106	AL7	G	14	29	Right-handed alpha
Helix 107	AL8	G	73	81	Right-handed alpha
Helix 108	AL9	G	106	111	Right-handed alpha

There are 42 sheets in PDB entry 8EJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	26	first strand
Strand 2	A	190	198	anti-parallel
Strand 3	A	171	180	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	144	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	126	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	18	19	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	136	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	204	205	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	200	201	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	223	224	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel
Strand 4	C	541	542	parallel
Strand 5	C	558	562	anti-parallel
Strand 6	C	568	572	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	734	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	749	762	anti-parallel
Strand 3	C	865	877	anti-parallel
Strand 4	C	845	854	anti-parallel
Strand 5	C	795	796	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	806	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	637	first strand
Strand 2	D	662	666	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	962	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	903	904	first strand
Strand 2	D	910	911	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1052	first strand
Strand 2	D	1067	1068	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1270	1274	first strand
Strand 2	E	104	108	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	39	first strand
Strand 2	G	64	68	anti-parallel
Strand 3	G	5	10	anti-parallel
Strand 4	G	85	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ3