Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EJ5 entry

There are 4 chains in PDB entry 8EJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 473
B
 VAL 1PHE 90
C
 VAL 1PHE 90
D
 VAL 1PHE 90
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8EJ5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 12Right-handed alpha
Helix 2
AA2
A
22 30Right-handed alpha
Helix 3
AA3
A
33 39Right-handed alpha
Helix 4
AA4
A
43 58Right-handed alpha
Helix 5
AA5
A
60 72Right-handed alpha
Helix 6
AA6
A
88 106Right-handed alpha
Helix 7
AA7
A
123 137Right-handed alpha
Helix 8
AA8
A
142 148Right-handed alpha
Helix 9
AA9
A
151 160Right-handed alpha
Helix 10
AB1
A
161 164Right-handed 310
Helix 11
AB2
A
165 170Right-handed alpha
Helix 12
AB3
A
176 189Right-handed alpha
Helix 13
AB4
A
212 233Right-handed alpha
Helix 14
AB5
A
264 277Right-handed alpha
Helix 15
AB6
A
323 329Right-handed alpha
Helix 16
AB7
A
336 340Right-handed 310
Helix 17
AB8
A
353 367Right-handed alpha
Helix 18
AB9
A
382 390Right-handed alpha
Helix 19
AC1
A
462 464Right-handed 310
Helix 20
AC2
B
2 21Right-handed alpha
Helix 21
AC3
B
27 45Right-handed alpha
Helix 22
AC4
B
45 55Right-handed alpha
Helix 23
AC5
B
61 68Right-handed alpha
Helix 24
AC6
B
70 86Right-handed alpha
Helix 25
AC7
C
2 21Right-handed alpha
Helix 26
AC8
C
27 45Right-handed alpha
Helix 27
AC9
C
45 55Right-handed alpha
Helix 28
AD1
C
61 68Right-handed alpha
Helix 29
AD2
C
70 86Right-handed alpha
Helix 30
AD3
D
2 21Right-handed alpha
Helix 31
AD4
D
27 45Right-handed alpha
Helix 32
AD5
D
45 55Right-handed alpha
Helix 33
AD6
D
61 68Right-handed alpha
Helix 34
AD7
D
70 86Right-handed alpha
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There are 2 sheets in PDB entry 8EJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 255first strand
Strand 2
A
258 263anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 317first strand
Strand 2
A
451 455anti-parallel
Strand 3
A
433 437anti-parallel
Strand 4
A
420 427anti-parallel
Strand 5
A
403 406anti-parallel
Strand 6
A
466 469anti-parallel
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