Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJC entry

There are 5 chains in PDB entry 8EJC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	VAL 238
B	LEU 4	ASN 340
C	THR 6	GLU 63
E	ASP 1	LYS 248
R	ASP 2	LEU 279

There are 28 helices in PDB entry 8EJC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	33	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	87	93	Right-handed 310
Helix 4	AA4	A	109	122	Right-handed alpha
Helix 5	AA5	A	137	148	Right-handed alpha
Helix 6	AA6	A	151	156	Right-handed 310
Helix 7	AA7	A	157	162	Right-handed alpha
Helix 8	AA8	A	175	195	Right-handed alpha
Helix 9	AA9	A	214	235	Right-handed alpha
Helix 10	AB1	B	5	26	Right-handed alpha
Helix 11	AB2	B	29	35	Right-handed alpha
Helix 12	AB3	C	7	28	Right-handed alpha
Helix 13	AB4	C	29	44	Right-handed alpha
Helix 14	AB5	E	28	32	Right-handed 310
Helix 15	AB6	E	53	56	Right-handed 310
Helix 16	AB7	E	62	65	Right-handed 310
Helix 17	AB8	E	87	91	Right-handed 310
Helix 18	AB9	E	220	224	Right-handed 310
Helix 19	AC1	R	4	37	Right-handed alpha
Helix 20	AC2	R	39	68	Right-handed alpha
Helix 21	AC3	R	75	77	Right-handed 310
Helix 22	AC4	R	78	110	Right-handed alpha
Helix 23	AC5	R	110	117	Right-handed alpha
Helix 24	AC6	R	119	144	Right-handed alpha
Helix 25	AC7	R	175	212	Right-handed alpha
Helix 26	AC8	R	215	235	Right-handed alpha
Helix 27	AC9	R	236	250	Right-handed alpha
Helix 28	AD1	R	255	277	Right-handed alpha

There are 13 sheets in PDB entry 8EJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	71	77	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	97	103	parallel
Strand 5	A	130	136	parallel
Strand 6	A	203	207	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	134	138	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	118	119	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	45	51	anti-parallel
Strand 3	E	33	39	anti-parallel
Strand 4	E	95	99	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	149	first strand
Strand 2	E	243	247	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJC