Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EJD entry

There are 6 chains in PDB entry 8EJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 59SER 255
c
 GLY 260GLY 424
A
 THR 59SER 255
a
 GLY 260GLY 424
B
 THR 59SER 255
b
 GLY 260GLY 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8EJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
74 79Right-handed 310
Helix 2
AA2
C
119 126Right-handed alpha
Helix 3
AA3
C
130 143Right-handed alpha
Helix 4
AA4
C
149 151Right-handed 310
Helix 5
AA5
C
169 172Right-handed 310
Helix 6
AA6
C
182 195Right-handed alpha
Helix 7
AA7
C
198 203Right-handed 310
Helix 8
AA8
C
205 213Right-handed 310
Helix 9
AA9
C
238 246Right-handed alpha
Helix 10
AB1
c
281 285Right-handed 310
Helix 11
AB2
c
295 299Right-handed alpha
Helix 12
AB3
c
300 303Right-handed 310
Helix 13
AB4
c
308 325Right-handed alpha
Helix 14
AB5
c
333 345Right-handed alpha
Helix 15
AB6
c
346 359Right-handed alpha
Helix 16
AB7
c
395 398Right-handed 310
Helix 17
AB8
c
399 424Right-handed alpha
Helix 18
AB9
A
74 79Right-handed 310
Helix 19
AC1
A
119 126Right-handed alpha
Helix 20
AC2
A
130 143Right-handed alpha
Helix 21
AC3
A
149 151Right-handed 310
Helix 22
AC4
A
169 172Right-handed 310
Helix 23
AC5
A
182 195Right-handed alpha
Helix 24
AC6
A
198 203Right-handed 310
Helix 25
AC7
A
205 213Right-handed 310
Helix 26
AC8
A
238 246Right-handed alpha
Helix 27
AC9
a
281 285Right-handed 310
Helix 28
AD1
a
295 299Right-handed alpha
Helix 29
AD2
a
300 303Right-handed 310
Helix 30
AD3
a
308 325Right-handed alpha
Helix 31
AD4
a
333 345Right-handed alpha
Helix 32
AD5
a
346 359Right-handed alpha
Helix 33
AD6
a
395 398Right-handed 310
Helix 34
AD7
a
399 424Right-handed alpha
Helix 35
AD8
B
74 79Right-handed 310
Helix 36
AD9
B
119 126Right-handed alpha
Helix 37
AE1
B
130 143Right-handed alpha
Helix 38
AE2
B
149 151Right-handed 310
Helix 39
AE3
B
169 172Right-handed 310
Helix 40
AE4
B
182 195Right-handed alpha
Helix 41
AE5
B
198 203Right-handed 310
Helix 42
AE6
B
205 213Right-handed 310
Helix 43
AE7
B
238 246Right-handed alpha
Helix 44
AE8
b
281 285Right-handed 310
Helix 45
AE9
b
295 299Right-handed alpha
Helix 46
AF1
b
300 303Right-handed 310
Helix 47
AF2
b
308 325Right-handed alpha
Helix 48
AF3
b
333 345Right-handed alpha
Helix 49
AF4
b
346 359Right-handed alpha
Helix 50
AF5
b
395 398Right-handed 310
Helix 51
AF6
b
399 424Right-handed alpha
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There are 9 sheets in PDB entry 8EJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 62first strand
Strand 2
C
66 72anti-parallel
Strand 3
c
363 374anti-parallel
Strand 4
c
384 389anti-parallel
Strand 5
c
392 393anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 87first strand
Strand 2
C
92 97anti-parallel
Strand 3
C
101 108anti-parallel
Strand 4
C
219 226anti-parallel
Strand 5
C
164 167anti-parallel
Strand 6
C
153 155anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
277 280first strand
Strand 2
c
291 294anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
66 72anti-parallel
Strand 3
a
363 374anti-parallel
Strand 4
a
384 389anti-parallel
Strand 5
a
392 393anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
101 108anti-parallel
Strand 4
A
219 226anti-parallel
Strand 5
A
164 167anti-parallel
Strand 6
A
153 155anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
277 280first strand
Strand 2
a
291 294anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 62first strand
Strand 2
B
66 72anti-parallel
Strand 3
b
363 374anti-parallel
Strand 4
b
384 389anti-parallel
Strand 5
b
392 393anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
101 108anti-parallel
Strand 4
B
219 226anti-parallel
Strand 5
B
164 167anti-parallel
Strand 6
B
153 155anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
277 280first strand
Strand 2
b
291 294anti-parallel
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