Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJE entry

There are 6 chains in PDB entry 8EJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 60	SER 254
a	GLY 259	ILE 419
B	THR 60	SER 254
b	GLY 259	ILE 419
C	THR 60	SER 254
c	GLY 259	ILE 419

There are 45 helices in PDB entry 8EJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	78	Right-handed 310
Helix 2	AA2	A	118	126	Right-handed alpha
Helix 3	AA3	A	129	142	Right-handed alpha
Helix 4	AA4	A	168	170	Right-handed 310
Helix 5	AA5	A	171	178	Right-handed alpha
Helix 6	AA6	A	182	194	Right-handed alpha
Helix 7	AA7	A	201	205	Right-handed 310
Helix 8	AA8	A	237	246	Right-handed alpha
Helix 9	AA9	a	293	298	Right-handed alpha
Helix 10	AB1	a	299	302	Right-handed 310
Helix 11	AB2	a	306	325	Right-handed alpha
Helix 12	AB3	a	333	344	Right-handed alpha
Helix 13	AB4	a	345	357	Right-handed alpha
Helix 14	AB5	a	358	360	Right-handed 310
Helix 15	AB6	a	398	415	Right-handed alpha
Helix 16	AB7	B	73	78	Right-handed 310
Helix 17	AB8	B	118	126	Right-handed alpha
Helix 18	AB9	B	129	142	Right-handed alpha
Helix 19	AC1	B	168	170	Right-handed 310
Helix 20	AC2	B	171	178	Right-handed alpha
Helix 21	AC3	B	182	194	Right-handed alpha
Helix 22	AC4	B	201	205	Right-handed 310
Helix 23	AC5	B	237	246	Right-handed alpha
Helix 24	AC6	b	293	298	Right-handed alpha
Helix 25	AC7	b	299	302	Right-handed 310
Helix 26	AC8	b	306	325	Right-handed alpha
Helix 27	AC9	b	333	344	Right-handed alpha
Helix 28	AD1	b	345	357	Right-handed alpha
Helix 29	AD2	b	358	360	Right-handed 310
Helix 30	AD3	b	398	415	Right-handed alpha
Helix 31	AD4	C	73	78	Right-handed 310
Helix 32	AD5	C	118	126	Right-handed alpha
Helix 33	AD6	C	129	142	Right-handed alpha
Helix 34	AD7	C	168	170	Right-handed 310
Helix 35	AD8	C	171	178	Right-handed alpha
Helix 36	AD9	C	182	194	Right-handed alpha
Helix 37	AE1	C	201	205	Right-handed 310
Helix 38	AE2	C	237	246	Right-handed alpha
Helix 39	AE3	c	293	298	Right-handed alpha
Helix 40	AE4	c	299	302	Right-handed 310
Helix 41	AE5	c	306	325	Right-handed alpha
Helix 42	AE6	c	333	344	Right-handed alpha
Helix 43	AE7	c	345	357	Right-handed alpha
Helix 44	AE8	c	358	360	Right-handed 310
Helix 45	AE9	c	398	415	Right-handed alpha

There are 12 sheets in PDB entry 8EJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	71	first strand
Strand 2	a	367	373	anti-parallel
Strand 3	a	383	384	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	92	95	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	218	225	anti-parallel
Strand 5	A	162	166	anti-parallel
Strand 6	A	152	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	277	279	first strand
Strand 2	a	290	292	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	387	388	first strand
Strand 2	a	391	392	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	71	first strand
Strand 2	b	367	373	anti-parallel
Strand 3	b	383	384	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	92	95	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	218	225	anti-parallel
Strand 5	B	162	166	anti-parallel
Strand 6	B	152	155	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	277	279	first strand
Strand 2	b	290	292	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	387	388	first strand
Strand 2	b	391	392	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	71	first strand
Strand 2	c	367	373	anti-parallel
Strand 3	c	383	384	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	92	95	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	218	225	anti-parallel
Strand 5	C	162	166	anti-parallel
Strand 6	C	152	155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	277	279	first strand
Strand 2	c	290	292	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	387	388	first strand
Strand 2	c	391	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJE