Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJG entry

There are 6 chains in PDB entry 8EJG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 59	SER 254
a	GLY 259	GLY 423
B	LEU 59	SER 254
C	LEU 59	SER 254
b	GLY 259	GLY 423
c	GLY 259	GLY 423

There are 48 helices in PDB entry 8EJG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	78	Right-handed 310
Helix 2	AA2	A	118	126	Right-handed alpha
Helix 3	AA3	A	129	142	Right-handed alpha
Helix 4	AA4	A	148	150	Right-handed 310
Helix 5	AA5	A	156	160	Right-handed 310
Helix 6	AA6	A	181	194	Right-handed alpha
Helix 7	AA7	A	197	201	Right-handed 310
Helix 8	AA8	A	237	245	Right-handed alpha
Helix 9	AA9	a	263	269	Right-handed 310
Helix 10	AB1	a	293	298	Right-handed alpha
Helix 11	AB2	a	299	302	Right-handed 310
Helix 12	AB3	a	306	324	Right-handed alpha
Helix 13	AB4	a	335	340	Right-handed alpha
Helix 14	AB5	a	341	343	Right-handed 310
Helix 15	AB6	a	345	358	Right-handed alpha
Helix 16	AB7	a	398	421	Right-handed alpha
Helix 17	AB8	B	73	78	Right-handed 310
Helix 18	AB9	B	118	126	Right-handed alpha
Helix 19	AC1	B	129	142	Right-handed alpha
Helix 20	AC2	B	148	150	Right-handed 310
Helix 21	AC3	B	156	160	Right-handed 310
Helix 22	AC4	B	181	194	Right-handed alpha
Helix 23	AC5	B	197	201	Right-handed 310
Helix 24	AC6	B	237	245	Right-handed alpha
Helix 25	AC7	C	73	78	Right-handed 310
Helix 26	AC8	C	118	126	Right-handed alpha
Helix 27	AC9	C	129	142	Right-handed alpha
Helix 28	AD1	C	148	150	Right-handed 310
Helix 29	AD2	C	156	160	Right-handed 310
Helix 30	AD3	C	181	194	Right-handed alpha
Helix 31	AD4	C	197	201	Right-handed 310
Helix 32	AD5	C	237	245	Right-handed alpha
Helix 33	AD6	b	263	269	Right-handed 310
Helix 34	AD7	b	293	298	Right-handed alpha
Helix 35	AD8	b	299	302	Right-handed 310
Helix 36	AD9	b	306	324	Right-handed alpha
Helix 37	AE1	b	335	340	Right-handed alpha
Helix 38	AE2	b	341	343	Right-handed 310
Helix 39	AE3	b	345	358	Right-handed alpha
Helix 40	AE4	b	398	421	Right-handed alpha
Helix 41	AE5	c	263	269	Right-handed 310
Helix 42	AE6	c	293	298	Right-handed alpha
Helix 43	AE7	c	299	302	Right-handed 310
Helix 44	AE8	c	306	324	Right-handed alpha
Helix 45	AE9	c	335	340	Right-handed alpha
Helix 46	AF1	c	341	343	Right-handed 310
Helix 47	AF2	c	345	358	Right-handed alpha
Helix 48	AF3	c	398	421	Right-handed alpha

There are 9 sheets in PDB entry 8EJG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	65	71	anti-parallel
Strand 3	a	367	373	anti-parallel
Strand 4	a	383	384	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	154	first strand
Strand 2	A	162	166	anti-parallel
Strand 3	A	218	225	anti-parallel
Strand 4	A	100	107	anti-parallel
Strand 5	A	91	95	anti-parallel
Strand 6	A	83	88	anti-parallel
Strand 7	A	233	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	387	388	first strand
Strand 2	a	391	392	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	65	71	anti-parallel
Strand 3	b	367	373	anti-parallel
Strand 4	b	383	384	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	218	225	anti-parallel
Strand 4	B	100	107	anti-parallel
Strand 5	B	91	95	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	233	236	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	61	first strand
Strand 2	C	65	71	anti-parallel
Strand 3	c	367	373	anti-parallel
Strand 4	c	383	384	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	154	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	218	225	anti-parallel
Strand 4	C	100	107	anti-parallel
Strand 5	C	91	95	anti-parallel
Strand 6	C	83	88	anti-parallel
Strand 7	C	233	236	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	387	388	first strand
Strand 2	b	391	392	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	387	388	first strand
Strand 2	c	391	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJG