Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJI entry

There are 8 chains in PDB entry 8EJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	SER 255
a	GLY 260	GLU 418
B	THR 59	SER 255
b	GLY 260	LYS 417
H	GLU 1	SER 128
L	GLU 1	LYS 127
C	THR 59	SER 255
c	GLY 260	GLU 418

There are 50 helices in PDB entry 8EJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	130	143	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	182	195	Right-handed alpha
Helix 6	AA6	A	198	204	Right-handed alpha
Helix 7	AA7	A	209	213	Right-handed 310
Helix 8	AA8	A	238	245	Right-handed alpha
Helix 9	AA9	a	294	304	Right-handed alpha
Helix 10	AB1	a	307	326	Right-handed alpha
Helix 11	AB2	a	329	333	Right-handed 310
Helix 12	AB3	a	336	339	Right-handed 310
Helix 13	AB4	a	340	345	Right-handed alpha
Helix 14	AB5	a	346	359	Right-handed alpha
Helix 15	AB6	a	395	418	Right-handed alpha
Helix 16	AB7	B	63	65	Right-handed 310
Helix 17	AB8	B	74	79	Right-handed 310
Helix 18	AB9	B	119	127	Right-handed alpha
Helix 19	AC1	B	130	143	Right-handed alpha
Helix 20	AC2	B	149	151	Right-handed 310
Helix 21	AC3	B	169	171	Right-handed 310
Helix 22	AC4	B	182	195	Right-handed alpha
Helix 23	AC5	B	195	203	Right-handed alpha
Helix 24	AC6	B	238	247	Right-handed alpha
Helix 25	AC7	b	281	285	Right-handed 310
Helix 26	AC8	b	294	302	Right-handed alpha
Helix 27	AC9	b	307	326	Right-handed alpha
Helix 28	AD1	b	333	345	Right-handed alpha
Helix 29	AD2	b	346	359	Right-handed alpha
Helix 30	AD3	b	395	398	Right-handed 310
Helix 31	AD4	b	399	417	Right-handed alpha
Helix 32	AD5	H	29	37	Right-handed 310
Helix 33	AD6	H	96	100	Right-handed 310
Helix 34	AD7	L	95	99	Right-handed 310
Helix 35	AD8	C	63	65	Right-handed 310
Helix 36	AD9	C	74	79	Right-handed 310
Helix 37	AE1	C	119	127	Right-handed alpha
Helix 38	AE2	C	130	143	Right-handed alpha
Helix 39	AE3	C	149	151	Right-handed 310
Helix 40	AE4	C	169	171	Right-handed 310
Helix 41	AE5	C	182	195	Right-handed alpha
Helix 42	AE6	C	195	203	Right-handed alpha
Helix 43	AE7	C	238	247	Right-handed alpha
Helix 44	AE8	c	281	285	Right-handed 310
Helix 45	AE9	c	294	302	Right-handed alpha
Helix 46	AF1	c	307	326	Right-handed alpha
Helix 47	AF2	c	333	345	Right-handed alpha
Helix 48	AF3	c	346	359	Right-handed alpha
Helix 49	AF4	c	395	398	Right-handed 310
Helix 50	AF5	c	399	418	Right-handed alpha

There are 18 sheets in PDB entry 8EJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	88	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	155	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	279	281	first strand
Strand 2	a	290	292	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	67	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	b	363	369	anti-parallel
Strand 3	b	385	389	anti-parallel
Strand 4	b	392	393	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	225	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	156	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	87	92	anti-parallel
Strand 4	H	77	82	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	101	108	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	50	56	anti-parallel
Strand 6	H	66	68	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	101	108	anti-parallel
Strand 4	H	116	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	76	79	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	106	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	55	anti-parallel
Strand 6	L	66	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	101	106	anti-parallel
Strand 4	L	117	118	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	67	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	c	363	369	anti-parallel
Strand 3	c	385	389	anti-parallel
Strand 4	c	392	393	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	225	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	156	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJI