Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EJJ entry

There are 12 chains in PDB entry 8EJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	SER 255
B	THR 59	SER 255
C	THR 59	SER 255
H	GLY 11	SER 128
I	GLY 11	SER 128
J	TYR 2	LEU 127
L	TYR 2	LEU 127
a	GLY 260	GLN 423
b	GLY 260	GLN 423
c	GLY 260	GLN 423
h	GLY 11	SER 128
l	TYR 2	LEU 127

There are 54 helices in PDB entry 8EJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	130	143	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	183	195	Right-handed alpha
Helix 6	AA6	A	198	203	Right-handed 310
Helix 7	AA7	A	238	245	Right-handed alpha
Helix 8	AA8	B	74	79	Right-handed 310
Helix 9	AA9	B	119	127	Right-handed alpha
Helix 10	AB1	B	130	143	Right-handed alpha
Helix 11	AB2	B	149	151	Right-handed 310
Helix 12	AB3	B	183	195	Right-handed alpha
Helix 13	AB4	B	198	203	Right-handed 310
Helix 14	AB5	B	238	245	Right-handed alpha
Helix 15	AB6	C	74	79	Right-handed 310
Helix 16	AB7	C	119	127	Right-handed alpha
Helix 17	AB8	C	130	143	Right-handed alpha
Helix 18	AB9	C	149	151	Right-handed 310
Helix 19	AC1	C	183	195	Right-handed alpha
Helix 20	AC2	C	198	203	Right-handed 310
Helix 21	AC3	C	238	245	Right-handed alpha
Helix 22	AC4	H	71	74	Right-handed 310
Helix 23	AC5	H	111	112	Right-handed 310
Helix 24	AC6	I	71	74	Right-handed 310
Helix 25	AC7	I	111	112	Right-handed 310
Helix 26	AC8	J	95	99	Right-handed 310
Helix 27	AC9	L	95	99	Right-handed 310
Helix 28	AD1	a	281	285	Right-handed 310
Helix 29	AD2	a	294	299	Right-handed alpha
Helix 30	AD3	a	300	303	Right-handed 310
Helix 31	AD4	a	307	326	Right-handed alpha
Helix 32	AD5	a	334	345	Right-handed alpha
Helix 33	AD6	a	346	359	Right-handed alpha
Helix 34	AD7	a	395	398	Right-handed 310
Helix 35	AD8	a	399	423	Right-handed alpha
Helix 36	AD9	b	281	285	Right-handed 310
Helix 37	AE1	b	294	299	Right-handed alpha
Helix 38	AE2	b	300	303	Right-handed 310
Helix 39	AE3	b	307	326	Right-handed alpha
Helix 40	AE4	b	334	345	Right-handed alpha
Helix 41	AE5	b	346	359	Right-handed alpha
Helix 42	AE6	b	395	398	Right-handed 310
Helix 43	AE7	b	399	423	Right-handed alpha
Helix 44	AE8	c	281	285	Right-handed 310
Helix 45	AE9	c	294	299	Right-handed alpha
Helix 46	AF1	c	300	303	Right-handed 310
Helix 47	AF2	c	307	326	Right-handed alpha
Helix 48	AF3	c	334	345	Right-handed alpha
Helix 49	AF4	c	346	359	Right-handed alpha
Helix 50	AF5	c	395	398	Right-handed 310
Helix 51	AF6	c	399	423	Right-handed alpha
Helix 52	AF7	h	71	74	Right-handed 310
Helix 53	AF8	h	111	112	Right-handed 310
Helix 54	AF9	l	95	99	Right-handed 310

There are 27 sheets in PDB entry 8EJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	219	226	anti-parallel
Strand 4	A	101	108	anti-parallel
Strand 5	A	92	97	anti-parallel
Strand 6	A	84	87	anti-parallel
Strand 7	A	234	237	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	219	226	anti-parallel
Strand 4	B	101	108	anti-parallel
Strand 5	B	92	97	anti-parallel
Strand 6	B	84	87	anti-parallel
Strand 7	B	234	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	374	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	155	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	219	226	anti-parallel
Strand 4	C	101	108	anti-parallel
Strand 5	C	92	97	anti-parallel
Strand 6	C	84	87	anti-parallel
Strand 7	C	234	237	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	13	first strand
Strand 2	H	122	126	parallel
Strand 3	H	100	105	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	65	67	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	76	81	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	122	126	parallel
Strand 3	I	100	105	anti-parallel
Strand 4	I	39	44	anti-parallel
Strand 5	I	51	56	anti-parallel
Strand 6	I	65	67	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	22	first strand
Strand 2	I	86	91	anti-parallel
Strand 3	I	76	81	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	122	125	parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	40	44	anti-parallel
Strand 5	J	51	54	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	122	125	parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	116	118	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	24	first strand
Strand 2	J	86	91	anti-parallel
Strand 3	J	76	80	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	122	125	parallel
Strand 3	L	100	107	anti-parallel
Strand 4	L	40	44	anti-parallel
Strand 5	L	51	54	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	122	125	parallel
Strand 3	L	100	107	anti-parallel
Strand 4	L	116	118	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	86	91	anti-parallel
Strand 3	L	76	80	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	388	389	first strand
Strand 2	b	392	393	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	12	13	first strand
Strand 2	h	122	126	parallel
Strand 3	h	100	105	anti-parallel
Strand 4	h	39	44	anti-parallel
Strand 5	h	51	56	anti-parallel
Strand 6	h	65	67	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	19	22	first strand
Strand 2	h	86	91	anti-parallel
Strand 3	h	76	81	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	122	125	parallel
Strand 3	l	100	107	anti-parallel
Strand 4	l	40	44	anti-parallel
Strand 5	l	51	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	9	12	first strand
Strand 2	l	122	125	parallel
Strand 3	l	100	107	anti-parallel
Strand 4	l	116	118	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	19	24	first strand
Strand 2	l	86	91	anti-parallel
Strand 3	l	76	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJJ