Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EJM entry

There are 2 chains in PDB entry 8EJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 110SER 789
B
 LYS 559GLY 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8EJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 135Right-handed alpha
Helix 2
AA2
A
136 141Right-handed 310
Helix 3
AA3
A
142 151Right-handed alpha
Helix 4
AA4
A
165 180Right-handed alpha
Helix 5
AA5
A
194 209Right-handed alpha
Helix 6
AA6
A
238 248Right-handed alpha
Helix 7
AA7
A
261 265Right-handed 310
Helix 8
AA8
A
266 283Right-handed alpha
Helix 9
AA9
A
295 297Right-handed 310
Helix 10
AB1
A
298 304Right-handed alpha
Helix 11
AB2
A
330 346Right-handed alpha
Helix 12
AB3
A
358 376Right-handed alpha
Helix 13
AB4
A
393 398Right-handed alpha
Helix 14
AB5
A
399 402Right-handed 310
Helix 15
AB6
A
422 427Right-handed alpha
Helix 16
AB7
A
462 472Right-handed alpha
Helix 17
AB8
A
473 475Right-handed 310
Helix 18
AB9
A
486 493Right-handed alpha
Helix 19
AC1
A
500 505Right-handed 310
Helix 20
AC2
A
507 517Right-handed alpha
Helix 21
AC3
A
532 546Right-handed alpha
Helix 22
AC4
A
556 564Right-handed alpha
Helix 23
AC5
A
568 579Right-handed alpha
Helix 24
AC6
A
580 582Right-handed 310
Helix 25
AC7
A
583 595Right-handed alpha
Helix 26
AC8
A
606 616Right-handed alpha
Helix 27
AC9
A
622 637Right-handed alpha
Helix 28
AD1
A
640 647Right-handed alpha
Helix 29
AD2
A
650 671Right-handed alpha
Helix 30
AD3
A
683 698Right-handed alpha
Helix 31
AD4
A
754 762Right-handed alpha
Helix 32
AD5
A
774 789Right-handed alpha
Helix 33
AD6
B
564 573Right-handed alpha
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There are 4 sheets in PDB entry 8EJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 226first strand
Strand 2
A
217 221anti-parallel
Strand 3
A
233 237parallel
Strand 4
A
187 192parallel
Strand 5
A
254 259parallel
Strand 6
A
287 292parallel
Strand 7
A
155 159parallel
Strand 8
A
309 311parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
479 483parallel
Strand 3
A
433 438parallel
Strand 4
A
351 355parallel
Strand 5
A
415 420parallel
Strand 6
A
383 388parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 448first strand
Strand 2
A
453 460anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 704first strand
Strand 2
A
710 712anti-parallel
Strand 3
A
718 721anti-parallel
Strand 4
A
745 752parallel
Strand 5
A
733 741anti-parallel
Strand 6
A
701 704anti-parallel
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