Analysis of interatomic Contacts of Structural Units in PDB entry:
8EJV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EJV entry

There are 2 chains in PDB entry 8EJV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 29GLY 291
B
 ASP 41GLY 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8EJV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 37Right-handed alpha
Helix 2
AA2
A
45 57Right-handed alpha
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
77 91Right-handed alpha
Helix 5
AA5
A
105 116Right-handed alpha
Helix 6
AA6
A
118 136Right-handed alpha
Helix 7
AA7
A
177 186Right-handed alpha
Helix 8
AA8
A
188 199Right-handed alpha
Helix 9
AA9
A
211 226Right-handed alpha
Helix 10
AB1
A
266 273Right-handed alpha
Helix 11
AB2
A
273 291Right-handed alpha
Helix 12
AB3
B
45 57Right-handed alpha
Helix 13
AB4
B
66 75Right-handed alpha
Helix 14
AB5
B
77 91Right-handed alpha
Helix 15
AB6
B
106 116Right-handed alpha
Helix 16
AB7
B
118 136Right-handed alpha
Helix 17
AB8
B
177 186Right-handed alpha
Helix 18
AB9
B
188 197Right-handed alpha
Helix 19
AC1
B
211 226Right-handed alpha
Helix 20
AC2
B
266 273Right-handed alpha
Helix 21
AC3
B
273 291Right-handed alpha
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There are 4 sheets in PDB entry 8EJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
100 103anti-parallel
Strand 3
A
94 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
148 155anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
252 261anti-parallel
Strand 5
A
238 246anti-parallel
Strand 6
A
228 231anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
101 103anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
148 154anti-parallel
Strand 3
B
138 145anti-parallel
Strand 4
B
252 261anti-parallel
Strand 5
B
238 246anti-parallel
Strand 6
B
228 231anti-parallel
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