Analysis of interatomic Contacts of Structural Units in PDB entry:
8EKI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EKI entry

There are 5 chains in PDB entry 8EKI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 184
B
 ALA 2ARG 86
C
 MET 1LEU 701
D
 MET 1ALA 684
E
 MET 1ASP 754
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are115 helices in PDB entry 8EKI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 31Right-handed alpha
Helix 2
AA2
A
53 88Right-handed alpha
Helix 3
AA3
A
117 179Right-handed alpha
Helix 4
AA4
B
7 35Right-handed alpha
Helix 5
AA5
B
43 53Right-handed alpha
Helix 6
AA6
B
53 86Right-handed alpha
Helix 7
AA7
C
3 9Right-handed alpha
Helix 8
AA8
C
9 38Right-handed alpha
Helix 9
AA9
C
46 55Right-handed alpha
Helix 10
AB1
C
58 68Right-handed alpha
Helix 11
AB2
C
72 106Right-handed alpha
Helix 12
AB3
C
109 113Right-handed 310
Helix 13
AB4
C
114 131Right-handed alpha
Helix 14
AB5
C
141 160Right-handed alpha
Helix 15
AB6
C
160 180Right-handed alpha
Helix 16
AB7
C
190 210Right-handed alpha
Helix 17
AB8
C
238 245Right-handed alpha
Helix 18
AB9
C
245 256Right-handed alpha
Helix 19
AC1
C
261 288Right-handed alpha
Helix 20
AC2
C
289 293Right-handed 310
Helix 21
AC3
C
295 320Right-handed alpha
Helix 22
AC4
C
323 344Right-handed alpha
Helix 23
AC5
C
351 356Right-handed 310
Helix 24
AC6
C
357 380Right-handed alpha
Helix 25
AC7
C
382 384Right-handed 310
Helix 26
AC8
C
385 410Right-handed alpha
Helix 27
AC9
C
412 426Right-handed alpha
Helix 28
AD1
C
426 440Right-handed alpha
Helix 29
AD2
C
449 477Right-handed alpha
Helix 30
AD3
C
477 491Right-handed alpha
Helix 31
AD4
C
501 512Right-handed alpha
Helix 32
AD5
C
512 530Right-handed alpha
Helix 33
AD6
C
530 535Right-handed alpha
Helix 34
AD7
C
557 577Right-handed alpha
Helix 35
AD8
C
580 603Right-handed alpha
Helix 36
AD9
C
611 627Right-handed alpha
Helix 37
AE1
C
636 650Right-handed alpha
Helix 38
AE2
C
657 661Right-handed 310
Helix 39
AE3
C
662 669Right-handed alpha
Helix 40
AE4
C
671 679Right-handed alpha
Helix 41
AE5
C
685 697Right-handed alpha
Helix 42
AE6
D
2 16Right-handed alpha
Helix 43
AE7
D
18 26Right-handed alpha
Helix 44
AE8
D
31 42Right-handed alpha
Helix 45
AE9
D
52 61Right-handed alpha
Helix 46
AF1
D
71 83Right-handed alpha
Helix 47
AF2
D
86 91Right-handed alpha
Helix 48
AF3
D
95 113Right-handed alpha
Helix 49
AF4
D
119 133Right-handed alpha
Helix 50
AF5
D
142 148Right-handed alpha
Helix 51
AF6
D
155 165Right-handed alpha
Helix 52
AF7
D
165 177Right-handed alpha
Helix 53
AF8
D
181 188Right-handed alpha
Helix 54
AF9
D
189 198Right-handed alpha
Helix 55
AG1
D
209 217Right-handed alpha
Helix 56
AG2
D
217 225Right-handed alpha
Helix 57
AG3
D
227 235Right-handed alpha
Helix 58
AG4
D
245 263Right-handed alpha
Helix 59
AG5
D
266 284Right-handed alpha
Helix 60
AG6
D
284 290Right-handed alpha
Helix 61
AG7
D
293 307Right-handed alpha
Helix 62
AG8
D
321 335Right-handed alpha
Helix 63
AG9
D
340 350Right-handed alpha
Helix 64
AH1
D
351 370Right-handed alpha
Helix 65
AH2
D
372 383Right-handed alpha
Helix 66
AH3
D
398 413Right-handed alpha
Helix 67
AH4
D
416 426Right-handed alpha
Helix 68
AH5
D
431 447Right-handed alpha
Helix 69
AH6
D
456 473Right-handed alpha
Helix 70
AH7
D
474 477Right-handed 310
Helix 71
AH8
D
479 495Right-handed alpha
Helix 72
AH9
D
516 521Right-handed alpha
Helix 73
AI1
D
524 536Right-handed alpha
Helix 74
AI2
D
538 541Right-handed 310
Helix 75
AI3
D
542 557Right-handed alpha
Helix 76
AI4
D
564 583Right-handed alpha
Helix 77
AI5
D
585 602Right-handed alpha
Helix 78
AI6
D
604 624Right-handed alpha
Helix 79
AI7
D
630 634Right-handed 310
Helix 80
AI8
D
636 654Right-handed alpha
Helix 81
AI9
D
655 657Right-handed 310
Helix 82
AJ1
D
658 674Right-handed alpha
Helix 83
AJ2
E
7 18Right-handed alpha
Helix 84
AJ3
E
30 75Right-handed alpha
Helix 85
AJ4
E
78 94Right-handed alpha
Helix 86
AJ5
E
94 99Right-handed alpha
Helix 87
AJ6
E
101 130Right-handed alpha
Helix 88
AJ7
E
156 168Right-handed alpha
Helix 89
AJ8
E
169 172Right-handed 310
Helix 90
AJ9
E
177 182Right-handed alpha
Helix 91
AK1
E
185 203Right-handed alpha
Helix 92
AK2
E
206 215Right-handed alpha
Helix 93
AK3
E
242 264Right-handed alpha
Helix 94
AK4
E
265 291Right-handed alpha
Helix 95
AK5
E
291 296Right-handed alpha
Helix 96
AK6
E
301 322Right-handed alpha
Helix 97
AK7
E
330 339Right-handed alpha
Helix 98
AK8
E
344 364Right-handed alpha
Helix 99
AK9
E
368 372Right-handed 310
Helix 100
AL1
E
494 510Right-handed alpha
Helix 101
AL2
E
518 539Right-handed alpha
Helix 102
AL3
E
542 557Right-handed alpha
Helix 103
AL4
E
560 596Right-handed alpha
Helix 104
AL5
E
602 607Right-handed alpha
Helix 105
AL6
E
608 617Right-handed alpha
Helix 106
AL7
E
617 625Right-handed alpha
Helix 107
AL8
E
626 642Right-handed alpha
Helix 108
AL9
E
645 651Right-handed alpha
Helix 109
AM1
E
656 672Right-handed alpha
Helix 110
AM2
E
676 680Right-handed 310
Helix 111
AM3
E
682 699Right-handed alpha
Helix 112
AM4
E
702 712Right-handed alpha
Helix 113
AM5
E
713 718Right-handed 310
Helix 114
AM6
E
719 731Right-handed alpha
Helix 115
AM7
E
734 751Right-handed alpha
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There are 5 sheets in PDB entry 8EKI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
106 111anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
609 610first strand
Strand 2
C
700 701parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
132 135first strand
Strand 2
E
138 141anti-parallel
Strand 3
E
232 237anti-parallel
Strand 4
E
222 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
144 147first strand
Strand 2
E
152 155anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
374 376first strand
Strand 2
E
490 492anti-parallel
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