Analysis of interatomic Contacts of Structural Units in PDB entry:
8EKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EKP entry

There are 4 chains in PDB entry 8EKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 31LEU 719
B
 GLU 31LEU 719
C
 GLU 31LEU 719
D
 GLU 31LEU 719
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 8EKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 87Right-handed alpha
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
119 127Right-handed alpha
Helix 5
AA5
A
135 146Right-handed alpha
Helix 6
AA6
A
166 174Right-handed alpha
Helix 7
AA7
A
176 186Right-handed alpha
Helix 8
AA8
A
196 200Right-handed 310
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
222 231Right-handed alpha
Helix 11
AB2
A
248 256Right-handed alpha
Helix 12
AB3
A
260 282Right-handed alpha
Helix 13
AB4
A
297 305Right-handed alpha
Helix 14
AB5
A
307 316Right-handed alpha
Helix 15
AB6
A
323 327Right-handed 310
Helix 16
AB7
A
355 363Right-handed alpha
Helix 17
AB8
A
368 374Right-handed alpha
Helix 18
AB9
A
377 413Right-handed alpha
Helix 19
AC1
A
430 459Right-handed alpha
Helix 20
AC2
A
466 492Right-handed alpha
Helix 21
AC3
A
496 510Right-handed alpha
Helix 22
AC4
A
511 518Right-handed 310
Helix 23
AC5
A
519 529Right-handed alpha
Helix 24
AC6
A
533 538Right-handed alpha
Helix 25
AC7
A
539 559Right-handed alpha
Helix 26
AC8
A
592 602Right-handed alpha
Helix 27
AC9
A
619 649Right-handed alpha
Helix 28
AD1
A
655 672Right-handed alpha
Helix 29
AD2
A
711 718Right-handed alpha
Helix 30
AD3
B
76 87Right-handed alpha
Helix 31
AD4
B
89 93Right-handed 310
Helix 32
AD5
B
94 103Right-handed alpha
Helix 33
AD6
B
119 127Right-handed alpha
Helix 34
AD7
B
135 146Right-handed alpha
Helix 35
AD8
B
166 174Right-handed alpha
Helix 36
AD9
B
176 186Right-handed alpha
Helix 37
AE1
B
196 200Right-handed 310
Helix 38
AE2
B
212 220Right-handed alpha
Helix 39
AE3
B
222 231Right-handed alpha
Helix 40
AE4
B
248 256Right-handed alpha
Helix 41
AE5
B
260 282Right-handed alpha
Helix 42
AE6
B
297 305Right-handed alpha
Helix 43
AE7
B
307 316Right-handed alpha
Helix 44
AE8
B
323 327Right-handed 310
Helix 45
AE9
B
355 363Right-handed alpha
Helix 46
AF1
B
368 374Right-handed alpha
Helix 47
AF2
B
377 413Right-handed alpha
Helix 48
AF3
B
430 459Right-handed alpha
Helix 49
AF4
B
466 492Right-handed alpha
Helix 50
AF5
B
496 510Right-handed alpha
Helix 51
AF6
B
511 518Right-handed 310
Helix 52
AF7
B
519 529Right-handed alpha
Helix 53
AF8
B
533 538Right-handed alpha
Helix 54
AF9
B
539 559Right-handed alpha
Helix 55
AG1
B
592 602Right-handed alpha
Helix 56
AG2
B
619 649Right-handed alpha
Helix 57
AG3
B
655 672Right-handed alpha
Helix 58
AG4
B
711 718Right-handed alpha
Helix 59
AG5
C
76 87Right-handed alpha
Helix 60
AG6
C
89 93Right-handed 310
Helix 61
AG7
C
94 103Right-handed alpha
Helix 62
AG8
C
119 127Right-handed alpha
Helix 63
AG9
C
135 146Right-handed alpha
Helix 64
AH1
C
166 174Right-handed alpha
Helix 65
AH2
C
176 186Right-handed alpha
Helix 66
AH3
C
196 200Right-handed 310
Helix 67
AH4
C
212 220Right-handed alpha
Helix 68
AH5
C
222 231Right-handed alpha
Helix 69
AH6
C
248 256Right-handed alpha
Helix 70
AH7
C
260 282Right-handed alpha
Helix 71
AH8
C
297 305Right-handed alpha
Helix 72
AH9
C
307 316Right-handed alpha
Helix 73
AI1
C
323 327Right-handed 310
Helix 74
AI2
C
355 363Right-handed alpha
Helix 75
AI3
C
368 374Right-handed alpha
Helix 76
AI4
C
377 413Right-handed alpha
Helix 77
AI5
C
430 459Right-handed alpha
Helix 78
AI6
C
466 492Right-handed alpha
Helix 79
AI7
C
496 510Right-handed alpha
Helix 80
AI8
C
511 518Right-handed 310
Helix 81
AI9
C
519 529Right-handed alpha
Helix 82
AJ1
C
533 538Right-handed alpha
Helix 83
AJ2
C
539 559Right-handed alpha
Helix 84
AJ3
C
592 602Right-handed alpha
Helix 85
AJ4
C
619 649Right-handed alpha
Helix 86
AJ5
C
655 672Right-handed alpha
Helix 87
AJ6
C
711 718Right-handed alpha
Helix 88
AJ7
D
76 87Right-handed alpha
Helix 89
AJ8
D
89 93Right-handed 310
Helix 90
AJ9
D
94 103Right-handed alpha
Helix 91
AK1
D
119 127Right-handed alpha
Helix 92
AK2
D
135 146Right-handed alpha
Helix 93
AK3
D
166 174Right-handed alpha
Helix 94
AK4
D
176 186Right-handed alpha
Helix 95
AK5
D
196 200Right-handed 310
Helix 96
AK6
D
212 220Right-handed alpha
Helix 97
AK7
D
222 231Right-handed alpha
Helix 98
AK8
D
248 256Right-handed alpha
Helix 99
AK9
D
260 282Right-handed alpha
Helix 100
AL1
D
297 305Right-handed alpha
Helix 101
AL2
D
307 316Right-handed alpha
Helix 102
AL3
D
323 327Right-handed 310
Helix 103
AL4
D
355 363Right-handed alpha
Helix 104
AL5
D
368 374Right-handed alpha
Helix 105
AL6
D
377 413Right-handed alpha
Helix 106
AL7
D
430 459Right-handed alpha
Helix 107
AL8
D
466 492Right-handed alpha
Helix 108
AL9
D
496 510Right-handed alpha
Helix 109
AM1
D
511 518Right-handed 310
Helix 110
AM2
D
519 529Right-handed alpha
Helix 111
AM3
D
533 538Right-handed alpha
Helix 112
AM4
D
539 559Right-handed alpha
Helix 113
AM5
D
592 602Right-handed alpha
Helix 114
AM6
D
619 649Right-handed alpha
Helix 115
AM7
D
655 672Right-handed alpha
Helix 116
AM8
D
711 718Right-handed alpha
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There are 4 sheets in PDB entry 8EKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
700 710anti-parallel
Strand 4
A
687 692anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 335first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
700 710anti-parallel
Strand 4
B
687 692anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 335first strand
Strand 2
C
338 344anti-parallel
Strand 3
C
700 710anti-parallel
Strand 4
C
687 692anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 335first strand
Strand 2
D
338 344anti-parallel
Strand 3
D
700 710anti-parallel
Strand 4
D
687 692anti-parallel
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