Analysis of interatomic Contacts of Structural Units in PDB entry:
8EKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EKS entry

There are 4 chains in PDB entry 8EKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 31PRO 720
B
 GLU 31PRO 720
C
 GLU 31PRO 720
D
 GLU 31PRO 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are124 helices in PDB entry 8EKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 87Right-handed alpha
Helix 2
AA2
A
88 93Right-handed 310
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
119 127Right-handed alpha
Helix 5
AA5
A
135 146Right-handed alpha
Helix 6
AA6
A
166 174Right-handed alpha
Helix 7
AA7
A
176 186Right-handed alpha
Helix 8
AA8
A
196 200Right-handed 310
Helix 9
AA9
A
212 220Right-handed alpha
Helix 10
AB1
A
222 231Right-handed alpha
Helix 11
AB2
A
248 257Right-handed alpha
Helix 12
AB3
A
260 282Right-handed alpha
Helix 13
AB4
A
286 290Right-handed 310
Helix 14
AB5
A
297 306Right-handed alpha
Helix 15
AB6
A
307 316Right-handed alpha
Helix 16
AB7
A
323 327Right-handed 310
Helix 17
AB8
A
355 363Right-handed alpha
Helix 18
AB9
A
368 373Right-handed alpha
Helix 19
AC1
A
377 389Right-handed alpha
Helix 20
AC2
A
389 413Right-handed alpha
Helix 21
AC3
A
429 459Right-handed alpha
Helix 22
AC4
A
459 466Right-handed alpha
Helix 23
AC5
A
470 492Right-handed alpha
Helix 24
AC6
A
496 511Right-handed alpha
Helix 25
AC7
A
512 518Right-handed 310
Helix 26
AC8
A
519 524Right-handed alpha
Helix 27
AC9
A
530 562Right-handed alpha
Helix 28
AD1
A
592 605Right-handed alpha
Helix 29
AD2
A
618 651Right-handed alpha
Helix 30
AD3
A
655 674Right-handed alpha
Helix 31
AD4
A
711 719Right-handed alpha
Helix 32
AD5
B
76 87Right-handed alpha
Helix 33
AD6
B
88 93Right-handed 310
Helix 34
AD7
B
94 103Right-handed alpha
Helix 35
AD8
B
119 127Right-handed alpha
Helix 36
AD9
B
135 146Right-handed alpha
Helix 37
AE1
B
166 174Right-handed alpha
Helix 38
AE2
B
176 186Right-handed alpha
Helix 39
AE3
B
196 200Right-handed 310
Helix 40
AE4
B
212 220Right-handed alpha
Helix 41
AE5
B
222 231Right-handed alpha
Helix 42
AE6
B
248 257Right-handed alpha
Helix 43
AE7
B
260 282Right-handed alpha
Helix 44
AE8
B
286 290Right-handed 310
Helix 45
AE9
B
297 306Right-handed alpha
Helix 46
AF1
B
307 316Right-handed alpha
Helix 47
AF2
B
323 327Right-handed 310
Helix 48
AF3
B
355 363Right-handed alpha
Helix 49
AF4
B
368 373Right-handed alpha
Helix 50
AF5
B
377 389Right-handed alpha
Helix 51
AF6
B
389 413Right-handed alpha
Helix 52
AF7
B
429 459Right-handed alpha
Helix 53
AF8
B
459 466Right-handed alpha
Helix 54
AF9
B
470 492Right-handed alpha
Helix 55
AG1
B
496 511Right-handed alpha
Helix 56
AG2
B
512 518Right-handed 310
Helix 57
AG3
B
519 524Right-handed alpha
Helix 58
AG4
B
530 562Right-handed alpha
Helix 59
AG5
B
592 605Right-handed alpha
Helix 60
AG6
B
618 651Right-handed alpha
Helix 61
AG7
B
655 674Right-handed alpha
Helix 62
AG8
B
711 719Right-handed alpha
Helix 63
AG9
C
76 87Right-handed alpha
Helix 64
AH1
C
88 93Right-handed 310
Helix 65
AH2
C
94 103Right-handed alpha
Helix 66
AH3
C
119 127Right-handed alpha
Helix 67
AH4
C
135 146Right-handed alpha
Helix 68
AH5
C
166 174Right-handed alpha
Helix 69
AH6
C
176 186Right-handed alpha
Helix 70
AH7
C
196 200Right-handed 310
Helix 71
AH8
C
212 220Right-handed alpha
Helix 72
AH9
C
222 231Right-handed alpha
Helix 73
AI1
C
248 257Right-handed alpha
Helix 74
AI2
C
260 282Right-handed alpha
Helix 75
AI3
C
286 290Right-handed 310
Helix 76
AI4
C
297 306Right-handed alpha
Helix 77
AI5
C
307 316Right-handed alpha
Helix 78
AI6
C
323 327Right-handed 310
Helix 79
AI7
C
355 363Right-handed alpha
Helix 80
AI8
C
368 373Right-handed alpha
Helix 81
AI9
C
377 389Right-handed alpha
Helix 82
AJ1
C
389 413Right-handed alpha
Helix 83
AJ2
C
429 459Right-handed alpha
Helix 84
AJ3
C
459 466Right-handed alpha
Helix 85
AJ4
C
470 492Right-handed alpha
Helix 86
AJ5
C
496 511Right-handed alpha
Helix 87
AJ6
C
512 518Right-handed 310
Helix 88
AJ7
C
519 524Right-handed alpha
Helix 89
AJ8
C
530 562Right-handed alpha
Helix 90
AJ9
C
592 605Right-handed alpha
Helix 91
AK1
C
618 651Right-handed alpha
Helix 92
AK2
C
655 674Right-handed alpha
Helix 93
AK3
C
711 719Right-handed alpha
Helix 94
AK4
D
76 87Right-handed alpha
Helix 95
AK5
D
88 93Right-handed 310
Helix 96
AK6
D
94 103Right-handed alpha
Helix 97
AK7
D
119 127Right-handed alpha
Helix 98
AK8
D
135 146Right-handed alpha
Helix 99
AK9
D
166 174Right-handed alpha
Helix 100
AL1
D
176 186Right-handed alpha
Helix 101
AL2
D
196 200Right-handed 310
Helix 102
AL3
D
212 220Right-handed alpha
Helix 103
AL4
D
222 231Right-handed alpha
Helix 104
AL5
D
248 257Right-handed alpha
Helix 105
AL6
D
260 282Right-handed alpha
Helix 106
AL7
D
286 290Right-handed 310
Helix 107
AL8
D
297 306Right-handed alpha
Helix 108
AL9
D
307 316Right-handed alpha
Helix 109
AM1
D
323 327Right-handed 310
Helix 110
AM2
D
355 363Right-handed alpha
Helix 111
AM3
D
368 373Right-handed alpha
Helix 112
AM4
D
377 389Right-handed alpha
Helix 113
AM5
D
389 413Right-handed alpha
Helix 114
AM6
D
429 459Right-handed alpha
Helix 115
AM7
D
459 466Right-handed alpha
Helix 116
AM8
D
470 492Right-handed alpha
Helix 117
AM9
D
496 511Right-handed alpha
Helix 118
AN1
D
512 518Right-handed 310
Helix 119
AN2
D
519 524Right-handed alpha
Helix 120
AN3
D
530 562Right-handed alpha
Helix 121
AN4
D
592 605Right-handed alpha
Helix 122
AN5
D
618 651Right-handed alpha
Helix 123
AN6
D
655 674Right-handed alpha
Helix 124
AN7
D
711 719Right-handed alpha
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There are 4 sheets in PDB entry 8EKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 344anti-parallel
Strand 3
A
699 710anti-parallel
Strand 4
A
687 693anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 335first strand
Strand 2
B
338 344anti-parallel
Strand 3
B
699 710anti-parallel
Strand 4
B
687 693anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 335first strand
Strand 2
C
338 344anti-parallel
Strand 3
C
699 710anti-parallel
Strand 4
C
687 693anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
329 335first strand
Strand 2
D
338 344anti-parallel
Strand 3
D
699 710anti-parallel
Strand 4
D
687 693anti-parallel
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