Analysis of interatomic Contacts of Structural Units in PDB entry:
8EL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EL4 entry

There are 6 chains in PDB entry 8EL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LYS 3
A
 ASP 5ALA 64
B
 GLY 14LEU 176
C
 ALA 1LYS 3
C
 ASP 5LEU 62
D
 LYS 15ALA 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8EL4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 57Right-handed alpha
Helix 2
AA2
B
21 31Right-handed alpha
Helix 3
AA3
B
33 47Right-handed alpha
Helix 4
AA4
B
47 63Right-handed alpha
Helix 5
AA5
B
64 68Right-handed 310
Helix 6
AA6
B
75 100Right-handed alpha
Helix 7
AA7
B
102 109Right-handed alpha
Helix 8
AA8
B
112 121Right-handed alpha
Helix 9
AA9
B
123 143Right-handed alpha
Helix 10
AB1
B
158 176Right-handed alpha
Helix 11
AB2
C
46 57Right-handed alpha
Helix 12
AB3
D
21 31Right-handed alpha
Helix 13
AB4
D
33 47Right-handed alpha
Helix 14
AB5
D
47 63Right-handed alpha
Helix 15
AB6
D
64 68Right-handed 310
Helix 16
AB7
D
75 100Right-handed alpha
Helix 17
AB8
D
102 109Right-handed alpha
Helix 18
AB9
D
112 121Right-handed alpha
Helix 19
AC1
D
123 143Right-handed alpha
Helix 20
AC2
D
158 177Right-handed alpha
Helix 21
AC3
E
46 57Right-handed alpha
Helix 22
AC4
F
46 57Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8EL4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 15first strand
Strand 2
A
34 42anti-parallel
Strand 3
B
17 20anti-parallel
Strand 4
E
34 42anti-parallel
Strand 5
E
7 15anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 15first strand
Strand 2
C
34 42anti-parallel
Strand 3
D
17 20anti-parallel
Strand 4
F
34 42anti-parallel
Strand 5
F
7 15anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il