Analysis of interatomic Contacts of Structural Units in PDB entry:
8ELD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ELD entry

There are 13 chains in PDB entry 8ELD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	ALA 330
B	ASP 5	ALA 330
C	ASP 5	ALA 330
D	THR 4	ALA 330
E	THR 4	ALA 330
F	THR 4	ALA 330
G	TYR 6	GLU 329
M	ALA 6	THR 120
L	ALA 6	THR 120
H	VAL 3	ALA 58
I	VAL 3	ALA 58
J	VAL 3	ALA 58
K	VAL 3	ALA 58

There are 81 helices in PDB entry 8ELD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	109	Right-handed alpha
Helix 2	AA2	A	113	140	Right-handed alpha
Helix 3	AA3	A	141	143	Right-handed 310
Helix 4	AA4	A	146	150	Right-handed 310
Helix 5	AA5	A	176	193	Right-handed alpha
Helix 6	AA6	A	206	214	Right-handed alpha
Helix 7	AA7	A	230	235	Right-handed alpha
Helix 8	AA8	A	260	264	Right-handed 310
Helix 9	AA9	A	266	271	Right-handed alpha
Helix 10	AB1	A	318	321	Right-handed 310
Helix 11	AB2	B	104	109	Right-handed alpha
Helix 12	AB3	B	113	141	Right-handed alpha
Helix 13	AB4	B	146	150	Right-handed 310
Helix 14	AB5	B	169	194	Right-handed alpha
Helix 15	AB6	B	206	214	Right-handed alpha
Helix 16	AB7	B	221	225	Right-handed 310
Helix 17	AB8	B	230	235	Right-handed alpha
Helix 18	AB9	B	260	264	Right-handed 310
Helix 19	AC1	B	266	271	Right-handed alpha
Helix 20	AC2	B	318	321	Right-handed 310
Helix 21	AC3	C	114	140	Right-handed alpha
Helix 22	AC4	C	141	143	Right-handed 310
Helix 23	AC5	C	146	150	Right-handed 310
Helix 24	AC6	C	164	168	Right-handed 310
Helix 25	AC7	C	172	194	Right-handed alpha
Helix 26	AC8	C	206	215	Right-handed alpha
Helix 27	AC9	C	266	271	Right-handed alpha
Helix 28	AD1	C	318	320	Right-handed 310
Helix 29	AD2	D	104	108	Right-handed alpha
Helix 30	AD3	D	113	140	Right-handed alpha
Helix 31	AD4	D	146	150	Right-handed 310
Helix 32	AD5	D	170	194	Right-handed alpha
Helix 33	AD6	D	206	214	Right-handed alpha
Helix 34	AD7	D	260	264	Right-handed 310
Helix 35	AD8	D	266	271	Right-handed alpha
Helix 36	AD9	D	318	321	Right-handed 310
Helix 37	AE1	E	104	109	Right-handed alpha
Helix 38	AE2	E	113	138	Right-handed alpha
Helix 39	AE3	E	139	143	Right-handed 310
Helix 40	AE4	E	169	194	Right-handed alpha
Helix 41	AE5	E	197	199	Right-handed 310
Helix 42	AE6	E	206	214	Right-handed alpha
Helix 43	AE7	E	221	225	Right-handed 310
Helix 44	AE8	E	318	321	Right-handed 310
Helix 45	AE9	F	104	109	Right-handed alpha
Helix 46	AF1	F	113	139	Right-handed alpha
Helix 47	AF2	F	140	143	Right-handed 310
Helix 48	AF3	F	146	150	Right-handed 310
Helix 49	AF4	F	172	193	Right-handed alpha
Helix 50	AF5	F	206	214	Right-handed alpha
Helix 51	AF6	F	230	235	Right-handed alpha
Helix 52	AF7	F	260	264	Right-handed 310
Helix 53	AF8	F	266	271	Right-handed alpha
Helix 54	AF9	G	41	45	Right-handed 310
Helix 55	AG1	G	103	109	Right-handed alpha
Helix 56	AG2	G	113	140	Right-handed alpha
Helix 57	AG3	G	169	194	Right-handed alpha
Helix 58	AG4	G	206	214	Right-handed alpha
Helix 59	AG5	G	268	270	Right-handed 310
Helix 60	AG6	G	318	321	Right-handed 310
Helix 61	AG7	M	11	28	Right-handed alpha
Helix 62	AG8	M	29	32	Right-handed 310
Helix 63	AG9	M	36	53	Right-handed alpha
Helix 64	AH1	M	68	84	Right-handed alpha
Helix 65	AH2	M	97	119	Right-handed alpha
Helix 66	AH3	L	12	28	Right-handed alpha
Helix 67	AH4	L	29	32	Right-handed 310
Helix 68	AH5	L	36	53	Right-handed alpha
Helix 69	AH6	L	68	84	Right-handed alpha
Helix 70	AH7	L	97	119	Right-handed alpha
Helix 71	AH8	H	7	30	Right-handed alpha
Helix 72	AH9	H	34	58	Right-handed alpha
Helix 73	AI1	I	7	12	Right-handed alpha
Helix 74	AI2	I	14	30	Right-handed alpha
Helix 75	AI3	I	34	45	Right-handed alpha
Helix 76	AI4	I	45	58	Right-handed alpha
Helix 77	AI5	J	7	30	Right-handed alpha
Helix 78	AI6	J	34	58	Right-handed alpha
Helix 79	AI7	K	7	12	Right-handed alpha
Helix 80	AI8	K	14	30	Right-handed alpha
Helix 81	AI9	K	34	58	Right-handed alpha

There are 22 sheets in PDB entry 8ELD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	22	23	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	B	62	63	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	283	298	parallel
Strand 3	A	303	316	anti-parallel
Strand 4	A	95	103	anti-parallel
Strand 5	B	70	72	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	89	first strand
Strand 2	A	60	63	anti-parallel
Strand 3	F	29	34	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	F	95	103	anti-parallel
Strand 3	F	303	315	anti-parallel
Strand 4	F	284	298	anti-parallel
Strand 5	F	48	50	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	323	327	parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	202	205	anti-parallel
Strand 5	A	245	247	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	34	first strand
Strand 2	C	59	64	parallel
Strand 3	C	85	90	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	283	298	parallel
Strand 3	B	303	316	anti-parallel
Strand 4	B	95	103	anti-parallel
Strand 5	C	70	72	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	161	first strand
Strand 2	B	323	327	parallel
Strand 3	B	272	278	anti-parallel
Strand 4	B	201	205	anti-parallel
Strand 5	B	245	247	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	D	59	64	parallel
Strand 3	D	85	90	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	283	298	parallel
Strand 3	C	303	316	anti-parallel
Strand 4	C	95	102	anti-parallel
Strand 5	D	70	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	322	327	parallel
Strand 3	C	272	278	anti-parallel
Strand 4	C	201	205	anti-parallel
Strand 5	C	243	247	parallel
Strand 6	C	239	240	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	E	58	64	parallel
Strand 3	E	85	91	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	283	298	parallel
Strand 3	D	303	316	anti-parallel
Strand 4	D	95	103	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	163	first strand
Strand 2	D	323	329	parallel
Strand 3	D	272	278	anti-parallel
Strand 4	D	201	205	anti-parallel
Strand 5	D	245	247	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	34	first strand
Strand 2	F	59	64	parallel
Strand 3	F	85	89	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	51	first strand
Strand 2	E	283	298	parallel
Strand 3	E	303	316	anti-parallel
Strand 4	E	95	103	anti-parallel
Strand 5	F	70	72	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	162	first strand
Strand 2	E	323	328	parallel
Strand 3	E	272	278	anti-parallel
Strand 4	E	201	205	anti-parallel
Strand 5	E	245	247	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	163	first strand
Strand 2	F	322	329	parallel
Strand 3	F	272	278	anti-parallel
Strand 4	F	201	205	anti-parallel
Strand 5	F	243	247	parallel
Strand 6	F	239	240	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	62	first strand
Strand 2	G	87	91	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	100	first strand
Strand 2	G	306	315	anti-parallel
Strand 3	G	284	295	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	161	first strand
Strand 2	G	323	327	parallel
Strand 3	G	272	277	anti-parallel
Strand 4	G	202	205	anti-parallel
Strand 5	G	245	247	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ELD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ELD