Analysis of interatomic Contacts of Structural Units in PDB entry:
8ELF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ELF entry

There are 2 chains in PDB entry 8ELF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 58LEU 456
B
 THR 58LEU 456
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8ELF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 85Right-handed alpha
Helix 2
AA2
A
98 105Right-handed alpha
Helix 3
AA3
A
125 130Right-handed alpha
Helix 4
AA4
A
130 145Right-handed alpha
Helix 5
AA5
A
150 154Right-handed 310
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
164 179Right-handed alpha
Helix 8
AA8
A
203 230Right-handed alpha
Helix 9
AA9
A
231 249Right-handed alpha
Helix 10
AB1
A
262 283Right-handed alpha
Helix 11
AB2
A
297 314Right-handed alpha
Helix 12
AB3
A
335 339Right-handed 310
Helix 13
AB4
A
356 363Right-handed alpha
Helix 14
AB5
A
366 377Right-handed alpha
Helix 15
AB6
A
404 408Right-handed 310
Helix 16
AB7
B
70 85Right-handed alpha
Helix 17
AB8
B
98 105Right-handed alpha
Helix 18
AB9
B
125 130Right-handed alpha
Helix 19
AC1
B
130 145Right-handed alpha
Helix 20
AC2
B
150 154Right-handed 310
Helix 21
AC3
B
155 159Right-handed 310
Helix 22
AC4
B
164 179Right-handed alpha
Helix 23
AC5
B
203 212Right-handed alpha
Helix 24
AC6
B
212 230Right-handed alpha
Helix 25
AC7
B
231 250Right-handed alpha
Helix 26
AC8
B
263 283Right-handed alpha
Helix 27
AC9
B
297 314Right-handed alpha
Helix 28
AD1
B
334 339Right-handed 310
Helix 29
AD2
B
356 363Right-handed alpha
Helix 30
AD3
B
366 379Right-handed alpha
Helix 31
AD4
B
404 408Right-handed 310
Helix 32
AD5
B
414 416Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8ELF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
119 123anti-parallel
Strand 3
A
89 93parallel
Strand 4
A
196 200parallel
Strand 5
A
59 64parallel
Strand 6
A
287 293parallel
Strand 7
A
320 325parallel
Strand 8
A
343 347parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 390first strand
Strand 2
A
395 399anti-parallel
Strand 3
A
449 455anti-parallel
Strand 4
A
439 446anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
418 423anti-parallel
Strand 3
A
426 431anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
119 123anti-parallel
Strand 3
B
89 93parallel
Strand 4
B
196 200parallel
Strand 5
B
59 64parallel
Strand 6
B
287 293parallel
Strand 7
B
320 325parallel
Strand 8
B
343 347parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 390first strand
Strand 2
B
395 399anti-parallel
Strand 3
B
449 455anti-parallel
Strand 4
B
439 446anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
409 411first strand
Strand 2
B
418 423anti-parallel
Strand 3
B
426 431anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il