Analysis of interatomic Contacts of Structural Units in PDB entry:
8EM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EM2 entry

There are 2 chains in PDB entry 8EM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 23GLN 526
B
 GLY 24GLN 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 8EM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 41Right-handed alpha
Helix 2
AA2
A
41 54Right-handed alpha
Helix 3
AA3
A
69 83Right-handed alpha
Helix 4
AA4
A
92 106Right-handed alpha
Helix 5
AA5
A
114 132Right-handed alpha
Helix 6
AA6
A
149 159Right-handed alpha
Helix 7
AA7
A
179 192Right-handed alpha
Helix 8
AA8
A
204 208Right-handed 310
Helix 9
AA9
A
210 212Right-handed 310
Helix 10
AB1
A
213 220Right-handed alpha
Helix 11
AB2
A
230 232Right-handed 310
Helix 12
AB3
A
257 263Right-handed alpha
Helix 13
AB4
A
267 276Right-handed alpha
Helix 14
AB5
A
286 299Right-handed alpha
Helix 15
AB6
A
314 324Right-handed alpha
Helix 16
AB7
A
382 386Right-handed 310
Helix 17
AB8
A
456 468Right-handed alpha
Helix 18
AB9
A
469 471Right-handed 310
Helix 19
AC1
A
475 493Right-handed alpha
Helix 20
AC2
A
503 507Right-handed 310
Helix 21
AC3
B
35 41Right-handed alpha
Helix 22
AC4
B
41 53Right-handed alpha
Helix 23
AC5
B
69 83Right-handed alpha
Helix 24
AC6
B
91 105Right-handed alpha
Helix 25
AC7
B
113 131Right-handed alpha
Helix 26
AC8
B
145 149Right-handed 310
Helix 27
AC9
B
150 159Right-handed alpha
Helix 28
AD1
B
179 191Right-handed alpha
Helix 29
AD2
B
203 207Right-handed 310
Helix 30
AD3
B
210 212Right-handed 310
Helix 31
AD4
B
213 221Right-handed alpha
Helix 32
AD5
B
221 226Right-handed alpha
Helix 33
AD6
B
250 256Right-handed alpha
Helix 34
AD7
B
257 263Right-handed alpha
Helix 35
AD8
B
267 277Right-handed alpha
Helix 36
AD9
B
282 286Right-handed 310
Helix 37
AE1
B
287 293Right-handed alpha
Helix 38
AE2
B
293 299Right-handed alpha
Helix 39
AE3
B
304 306Right-handed 310
Helix 40
AE4
B
315 324Right-handed alpha
Helix 41
AE5
B
382 386Right-handed 310
Helix 42
AE6
B
444 446Right-handed 310
Helix 43
AE7
B
456 468Right-handed alpha
Helix 44
AE8
B
475 482Right-handed alpha
Helix 45
AE9
B
486 493Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8EM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
60 66parallel
Strand 3
A
25 30parallel
Strand 4
A
135 141parallel
Strand 5
A
170 172parallel
Strand 6
A
200 202parallel
Strand 7
A
473 474anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 429first strand
Strand 2
A
446 451anti-parallel
Strand 3
A
411 415anti-parallel
Strand 4
A
397 404anti-parallel
Strand 5
A
366 373anti-parallel
Strand 6
A
234 242anti-parallel
Strand 7
A
354 359parallel
Strand 8
A
337 342anti-parallel
Strand 9
A
308 313anti-parallel
Strand 10
A
499 501parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
B
513 516anti-parallel
Strand 3
B
519 522anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
441 442anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 522first strand
Strand 2
A
513 516anti-parallel
Strand 3
B
377 378anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 110first strand
Strand 2
B
60 66parallel
Strand 3
B
26 30parallel
Strand 4
B
137 141parallel
Strand 5
B
167 172parallel
Strand 6
B
199 201parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 414first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
367 373anti-parallel
Strand 4
B
234 242anti-parallel
Strand 5
B
354 359parallel
Strand 6
B
337 342anti-parallel
Strand 7
B
308 313anti-parallel
Strand 8
B
499 501parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 429first strand
Strand 2
B
449 451anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 438first strand
Strand 2
B
441 442anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il