Analysis of interatomic Contacts of Structural Units in PDB entry:
8EM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EM5 entry

There are 6 chains in PDB entry 8EM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 12ALA 103
B
 ASP 12ALA 103
C
 ASP 12ALA 103
D
 ASP 52ALA 143
E
 ASP 12ALA 103
F
 ASP 12ALA 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8EM5

There are 10 sheets in PDB entry 8EM5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
82 90anti-parallel
Strand 5
C
82 90anti-parallel
Strand 6
C
72 79anti-parallel
Strand 7
C
14 21anti-parallel
Strand 8
C
49 55anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 46first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
95 100anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 55first strand
Strand 2
B
14 21anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
82 90anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 46first strand
Strand 2
B
27 33anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
95 103anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 46first strand
Strand 2
C
27 33anti-parallel
Strand 3
C
60 68anti-parallel
Strand 4
C
95 103anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 95first strand
Strand 2
D
54 61anti-parallel
Strand 3
D
112 119anti-parallel
Strand 4
D
122 130anti-parallel
Strand 5
F
82 90anti-parallel
Strand 6
F
72 79anti-parallel
Strand 7
F
14 21anti-parallel
Strand 8
F
49 55anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 86first strand
Strand 2
D
67 73anti-parallel
Strand 3
D
100 108anti-parallel
Strand 4
D
135 143anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
49 55first strand
Strand 2
E
14 21anti-parallel
Strand 3
E
72 79anti-parallel
Strand 4
E
82 90anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
39 46first strand
Strand 2
E
27 33anti-parallel
Strand 3
E
60 68anti-parallel
Strand 4
E
95 103anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
39 46first strand
Strand 2
F
27 33anti-parallel
Strand 3
F
60 68anti-parallel
Strand 4
F
95 103anti-parallel
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