Analysis of interatomic Contacts of Structural Units in PDB entry:
8EM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EM7 entry

There are 2 chains in PDB entry 8EM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 28GLU 4413
B
 CYS 28GLU 4413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are170 helices in PDB entry 8EM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 46Right-handed 310
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
84 86Right-handed 310
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
124 128Right-handed 310
Helix 6
AA6
A
159 165Right-handed 310
Helix 7
AA7
A
173 178Right-handed alpha
Helix 8
AA8
A
238 242Right-handed 310
Helix 9
AA9
A
308 315Right-handed alpha
Helix 10
AB1
A
349 353Right-handed 310
Helix 11
AB2
A
651 655Right-handed 310
Helix 12
AB3
A
664 669Right-handed 310
Helix 13
AB4
A
978 983Right-handed 310
Helix 14
AB5
A
1041 1045Right-handed 310
Helix 15
AB6
A
1083 1087Right-handed 310
Helix 16
AB7
A
1095 1100Right-handed alpha
Helix 17
AB8
A
1126 1129Right-handed 310
Helix 18
AB9
A
1138 1143Right-handed alpha
Helix 19
AC1
A
1165 1169Right-handed 310
Helix 20
AC2
A
1178 1183Right-handed alpha
Helix 21
AC3
A
1205 1209Right-handed 310
Helix 22
AC4
A
1219 1223Right-handed 310
Helix 23
AC5
A
1227 1231Right-handed 310
Helix 24
AC6
A
1248 1250Right-handed 310
Helix 25
AC7
A
1288 1292Right-handed 310
Helix 26
AC8
A
1301 1305Right-handed 310
Helix 27
AC9
A
1330 1332Right-handed 310
Helix 28
AD1
A
1346 1351Right-handed 310
Helix 29
AD2
A
1357 1361Right-handed 310
Helix 30
AD3
A
1393 1397Right-handed 310
Helix 31
AD4
A
1694 1698Right-handed 310
Helix 32
AD5
A
1704 1708Right-handed 310
Helix 33
AD6
A
2021 2026Right-handed alpha
Helix 34
AD7
A
2038 2040Right-handed 310
Helix 35
AD8
A
2331 2335Right-handed 310
Helix 36
AD9
A
2345 2354Right-handed 310
Helix 37
AE1
A
2654 2658Right-handed 310
Helix 38
AE2
A
2659 2663Right-handed 310
Helix 39
AE3
A
2717 2721Right-handed 310
Helix 40
AE4
A
2733 2738Right-handed alpha
Helix 41
AE5
A
2756 2760Right-handed 310
Helix 42
AE6
A
2798 2800Right-handed 310
Helix 43
AE7
A
2840 2844Right-handed 310
Helix 44
AE8
A
2856 2861Right-handed alpha
Helix 45
AE9
A
2882 2887Right-handed 310
Helix 46
AF1
A
2898 2902Right-handed 310
Helix 47
AF2
A
2924 2926Right-handed 310
Helix 48
AF3
A
2940 2948Right-handed 310
Helix 49
AF4
A
2971 2973Right-handed 310
Helix 50
AF5
A
2983 2987Right-handed 310
Helix 51
AF6
A
3011 3013Right-handed 310
Helix 52
AF7
A
3050 3054Right-handed 310
Helix 53
AF8
A
3066 3071Right-handed alpha
Helix 54
AF9
A
3093 3097Right-handed 310
Helix 55
AG1
A
3105 3110Right-handed alpha
Helix 56
AG2
A
3114 3118Right-handed 310
Helix 57
AG3
A
3156 3161Right-handed alpha
Helix 58
AG4
A
3162 3165Right-handed 310
Helix 59
AG5
A
3460 3464Right-handed 310
Helix 60
AG6
A
3474 3478Right-handed 310
Helix 61
AG7
A
3522 3525Right-handed 310
Helix 62
AG8
A
3531 3533Right-handed 310
Helix 63
AG9
A
3569 3575Right-handed 310
Helix 64
AH1
A
3587 3592Right-handed alpha
Helix 65
AH2
A
3612 3614Right-handed 310
Helix 66
AH3
A
3623 3627Right-handed 310
Helix 67
AH4
A
3628 3633Right-handed alpha
Helix 68
AH5
A
3653 3655Right-handed 310
Helix 69
AH6
A
3669 3674Right-handed alpha
Helix 70
AH7
A
3675 3679Right-handed 310
Helix 71
AH8
A
3698 3701Right-handed 310
Helix 72
AH9
A
3712 3716Right-handed 310
Helix 73
AI1
A
3738 3742Right-handed 310
Helix 74
AI2
A
3750 3755Right-handed alpha
Helix 75
AI3
A
3777 3781Right-handed 310
Helix 76
AI4
A
3815 3819Right-handed alpha
Helix 77
AI5
A
3830 3834Right-handed 310
Helix 78
AI6
A
3858 3862Right-handed 310
Helix 79
AI7
A
3872 3875Right-handed 310
Helix 80
AI8
A
3876 3881Right-handed alpha
Helix 81
AI9
A
3902 3906Right-handed 310
Helix 82
AJ1
A
3918 3923Right-handed alpha
Helix 83
AJ2
A
3946 3950Right-handed 310
Helix 84
AJ3
A
3971 3975Right-handed 310
Helix 85
AJ4
A
4011 4015Right-handed 310
Helix 86
AJ5
B
44 46Right-handed 310
Helix 87
AJ6
B
56 61Right-handed alpha
Helix 88
AJ7
B
84 86Right-handed 310
Helix 89
AJ8
B
96 101Right-handed alpha
Helix 90
AJ9
B
124 128Right-handed 310
Helix 91
AK1
B
159 165Right-handed 310
Helix 92
AK2
B
173 178Right-handed alpha
Helix 93
AK3
B
238 242Right-handed 310
Helix 94
AK4
B
308 315Right-handed alpha
Helix 95
AK5
B
349 353Right-handed 310
Helix 96
AK6
B
651 655Right-handed 310
Helix 97
AK7
B
664 669Right-handed 310
Helix 98
AK8
B
978 983Right-handed 310
Helix 99
AK9
B
1041 1045Right-handed 310
Helix 100
AL1
B
1083 1087Right-handed 310
Helix 101
AL2
B
1095 1100Right-handed alpha
Helix 102
AL3
B
1126 1129Right-handed 310
Helix 103
AL4
B
1138 1143Right-handed alpha
Helix 104
AL5
B
1165 1169Right-handed 310
Helix 105
AL6
B
1178 1183Right-handed alpha
Helix 106
AL7
B
1205 1209Right-handed 310
Helix 107
AL8
B
1219 1223Right-handed 310
Helix 108
AL9
B
1227 1231Right-handed 310
Helix 109
AM1
B
1248 1250Right-handed 310
Helix 110
AM2
B
1288 1292Right-handed 310
Helix 111
AM3
B
1301 1305Right-handed 310
Helix 112
AM4
B
1330 1332Right-handed 310
Helix 113
AM5
B
1346 1351Right-handed 310
Helix 114
AM6
B
1357 1361Right-handed 310
Helix 115
AM7
B
1393 1397Right-handed 310
Helix 116
AM8
B
1694 1698Right-handed 310
Helix 117
AM9
B
1704 1708Right-handed 310
Helix 118
AN1
B
2021 2026Right-handed alpha
Helix 119
AN2
B
2038 2040Right-handed 310
Helix 120
AN3
B
2331 2335Right-handed 310
Helix 121
AN4
B
2345 2354Right-handed 310
Helix 122
AN5
B
2654 2658Right-handed 310
Helix 123
AN6
B
2659 2663Right-handed 310
Helix 124
AN7
B
2717 2721Right-handed 310
Helix 125
AN8
B
2733 2738Right-handed alpha
Helix 126
AN9
B
2756 2760Right-handed 310
Helix 127
AO1
B
2798 2800Right-handed 310
Helix 128
AO2
B
2840 2844Right-handed 310
Helix 129
AO3
B
2856 2861Right-handed alpha
Helix 130
AO4
B
2882 2887Right-handed 310
Helix 131
AO5
B
2898 2902Right-handed 310
Helix 132
AO6
B
2924 2926Right-handed 310
Helix 133
AO7
B
2940 2948Right-handed 310
Helix 134
AO8
B
2971 2973Right-handed 310
Helix 135
AO9
B
2983 2987Right-handed 310
Helix 136
AP1
B
3011 3013Right-handed 310
Helix 137
AP2
B
3050 3054Right-handed 310
Helix 138
AP3
B
3066 3071Right-handed alpha
Helix 139
AP4
B
3093 3097Right-handed 310
Helix 140
AP5
B
3105 3110Right-handed alpha
Helix 141
AP6
B
3114 3118Right-handed 310
Helix 142
AP7
B
3156 3161Right-handed alpha
Helix 143
AP8
B
3162 3165Right-handed 310
Helix 144
AP9
B
3460 3464Right-handed 310
Helix 145
AQ1
B
3474 3478Right-handed 310
Helix 146
AQ2
B
3522 3525Right-handed 310
Helix 147
AQ3
B
3531 3533Right-handed 310
Helix 148
AQ4
B
3569 3575Right-handed 310
Helix 149
AQ5
B
3587 3592Right-handed alpha
Helix 150
AQ6
B
3612 3614Right-handed 310
Helix 151
AQ7
B
3623 3627Right-handed 310
Helix 152
AQ8
B
3628 3633Right-handed alpha
Helix 153
AQ9
B
3653 3655Right-handed 310
Helix 154
AR1
B
3669 3674Right-handed alpha
Helix 155
AR2
B
3675 3679Right-handed 310
Helix 156
AR3
B
3698 3701Right-handed 310
Helix 157
AR4
B
3712 3716Right-handed 310
Helix 158
AR5
B
3738 3742Right-handed 310
Helix 159
AR6
B
3750 3755Right-handed alpha
Helix 160
AR7
B
3777 3781Right-handed 310
Helix 161
AR8
B
3815 3819Right-handed alpha
Helix 162
AR9
B
3830 3834Right-handed 310
Helix 163
AS1
B
3858 3862Right-handed 310
Helix 164
AS2
B
3872 3875Right-handed 310
Helix 165
AS3
B
3876 3881Right-handed alpha
Helix 166
AS4
B
3902 3906Right-handed 310
Helix 167
AS5
B
3918 3923Right-handed alpha
Helix 168
AS6
B
3946 3950Right-handed 310
Helix 169
AS7
B
3971 3975Right-handed 310
Helix 170
AS8
B
4011 4015Right-handed 310
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