Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EMB entry

There are 3 chains in PDB entry 8EMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MSE 434GLY 983
B
MSE 434GLY 983
C
THR 440LYS 660
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8EMB. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
613 617Right-handed 310
Helix 2
AA2
A
694 698Right-handed 310
Helix 3
AA3
B
613 617Right-handed 310
Helix 4
AA4
C
694 701Right-handed alpha
Helix 5
AA5
D
613 617Right-handed 310
Helix 6
AA6
D
694 701Right-handed alpha
Helix 7
AA7
E
698 703Right-handed 310
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There are 66 sheets in PDB entry 8EMB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2, AH3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
436 444first strand
Strand 2
A
971 980anti-parallel
Strand 3
A
956 958anti-parallel
Strand 4
A
468 472anti-parallel
Strand 5
A
459 462anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
898 902first strand
Strand 2
A
941 952anti-parallel
Strand 3
A
932 937anti-parallel
Strand 4
A
915 916anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
898 902first strand
Strand 2
A
941 952anti-parallel
Strand 3
A
476 482anti-parallel
Strand 4
A
449 453anti-parallel
Strand 5
A
965 966anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
484 487first strand
Strand 2
A
889 893anti-parallel
Strand 3
A
875 878anti-parallel
Strand 4
A
501 502anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
493 494first strand
Strand 2
A
507 514anti-parallel
Strand 3
A
863 870anti-parallel
Strand 4
A
846 850anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 522first strand
Strand 2
A
533 543anti-parallel
Strand 3
A
821 833anti-parallel
Strand 4
A
807 814anti-parallel
Strand 5
A
579 581anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
520 522first strand
Strand 2
A
533 543anti-parallel
Strand 3
A
756 758anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
547 552first strand
Strand 2
A
559 564anti-parallel
Strand 3
A
569 572anti-parallel
Strand 4
A
585 589anti-parallel
Strand 5
A
791 797anti-parallel
Strand 6
A
766 773anti-parallel
Strand 7
A
619 623anti-parallel
Strand 8
A
608 609anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
742 746first strand
Strand 2
A
625 631anti-parallel
Strand 3
A
600 605anti-parallel
Strand 4
A
780 781anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
633 636first strand
Strand 2
A
679 685anti-parallel
Strand 3
A
668 674anti-parallel
Strand 4
A
650 652anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
688 691first strand
Strand 2
A
735 740anti-parallel
Strand 3
A
722 727anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
711 713first strand
Strand 2
A
716 717anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
921 923first strand
Strand 2
A
926 927anti-parallel
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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
436 444first strand
Strand 2
B
971 980anti-parallel
Strand 3
B
956 958anti-parallel
Strand 4
B
468 472anti-parallel
Strand 5
B
458 462anti-parallel
Strand 6
D
458 462anti-parallel
Strand 7
D
468 472anti-parallel
Strand 8
D
956 958anti-parallel
Strand 9
D
971 977anti-parallel
Strand 10
D
439 444anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
898 902first strand
Strand 2
B
941 952anti-parallel
Strand 3
B
932 937anti-parallel
Strand 4
B
915 916anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
898 902first strand
Strand 2
B
941 952anti-parallel
Strand 3
B
476 482anti-parallel
Strand 4
B
449 454anti-parallel
Strand 5
B
965 966anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
484 487first strand
Strand 2
B
889 893anti-parallel
Strand 3
B
875 878anti-parallel
Strand 4
B
501 502anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
493 494first strand
Strand 2
B
507 514anti-parallel
Strand 3
B
863 870anti-parallel
Strand 4
B
846 850anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
520 522first strand
Strand 2
B
533 543anti-parallel
Strand 3
B
756 758anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
520 522first strand
Strand 2
B
533 543anti-parallel
Strand 3
B
821 833anti-parallel
Strand 4
B
810 814anti-parallel
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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
548 550first strand
Strand 2
B
561 563anti-parallel
Strand 3
B
569 572anti-parallel
Strand 4
B
585 590anti-parallel
Strand 5
B
791 797anti-parallel
Strand 6
B
766 773anti-parallel
Strand 7
B
619 623anti-parallel
Strand 8
B
608 610anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
742 746first strand
Strand 2
B
625 631anti-parallel
Strand 3
B
600 605anti-parallel
Strand 4
B
780 781anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
633 636first strand
Strand 2
B
679 685anti-parallel
Strand 3
B
669 674anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
688 691first strand
Strand 2
B
735 740anti-parallel
Strand 3
B
722 727anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
711 713first strand
Strand 2
B
716 717anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
921 923first strand
Strand 2
B
926 927anti-parallel
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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
441 444first strand
Strand 2
C
971 975anti-parallel
Strand 3
C
956 958anti-parallel
Strand 4
C
468 472anti-parallel
Strand 5
C
459 462anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
898 902first strand
Strand 2
C
941 952anti-parallel
Strand 3
C
932 937anti-parallel
Strand 4
C
915 916anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
898 902first strand
Strand 2
C
941 952anti-parallel
Strand 3
C
476 482anti-parallel
Strand 4
C
449 453anti-parallel
Strand 5
C
965 966anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
484 487first strand
Strand 2
C
889 893anti-parallel
Strand 3
C
875 878anti-parallel
Strand 4
C
501 502anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
493 494first strand
Strand 2
C
507 514anti-parallel
Strand 3
C
863 870anti-parallel
Strand 4
C
846 850anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
520 522first strand
Strand 2
C
533 544anti-parallel
Strand 3
C
756 758anti-parallel
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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
520 522first strand
Strand 2
C
533 544anti-parallel
Strand 3
C
821 833anti-parallel
Strand 4
C
809 814anti-parallel
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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
548 552first strand
Strand 2
C
559 563anti-parallel
Strand 3
C
569 572anti-parallel
Strand 4
C
585 589anti-parallel
Strand 5
C
791 797anti-parallel
Strand 6
C
766 773anti-parallel
Strand 7
C
619 623anti-parallel
Strand 8
C
608 610anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
742 746first strand
Strand 2
C
625 631anti-parallel
Strand 3
C
600 605anti-parallel
Strand 4
C
780 781anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
633 636first strand
Strand 2
C
679 685anti-parallel
Strand 3
C
668 674anti-parallel
Strand 4
C
650 652anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
657 659first strand
Strand 2
C
662 663anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
688 691first strand
Strand 2
C
735 740anti-parallel
Strand 3
C
722 727anti-parallel
Strand 4
C
705 706anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
711 713first strand
Strand 2
C
716 717anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
921 923first strand
Strand 2
C
926 927anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
898 902first strand
Strand 2
D
941 952anti-parallel
Strand 3
D
932 937anti-parallel
Strand 4
D
915 916anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
898 902first strand
Strand 2
D
941 952anti-parallel
Strand 3
D
476 482anti-parallel
Strand 4
D
449 454anti-parallel
Strand 5
D
965 966anti-parallel
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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
484 487first strand
Strand 2
D
889 894anti-parallel
Strand 3
D
875 880anti-parallel
Strand 4
D
501 502anti-parallel
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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
493 494first strand
Strand 2
D
507 514anti-parallel
Strand 3
D
863 870anti-parallel
Strand 4
D
846 850anti-parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
520 522first strand
Strand 2
D
533 543anti-parallel
Strand 3
D
756 757anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
520 522first strand
Strand 2
D
533 543anti-parallel
Strand 3
D
821 833anti-parallel
Strand 4
D
809 814anti-parallel
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There are 8 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
548 552first strand
Strand 2
D
559 563anti-parallel
Strand 3
D
569 572anti-parallel
Strand 4
D
585 589anti-parallel
Strand 5
D
791 797anti-parallel
Strand 6
D
766 773anti-parallel
Strand 7
D
619 623anti-parallel
Strand 8
D
608 610anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
742 746first strand
Strand 2
D
625 631anti-parallel
Strand 3
D
600 605anti-parallel
Strand 4
D
780 781anti-parallel
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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
633 636first strand
Strand 2
D
679 685anti-parallel
Strand 3
D
668 674anti-parallel
Strand 4
D
650 652anti-parallel
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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
688 691first strand
Strand 2
D
735 740anti-parallel
Strand 3
D
722 727anti-parallel
Strand 4
D
705 706anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
711 713first strand
Strand 2
D
716 717anti-parallel
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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
921 923first strand
Strand 2
D
926 927anti-parallel
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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
512 514first strand
Strand 2
E
863 866anti-parallel
Strand 3
E
849 850anti-parallel
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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
520 522first strand
Strand 2
E
532 538anti-parallel
Strand 3
E
831 834anti-parallel
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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
579 580first strand
Strand 2
E
808 813anti-parallel
Strand 3
E
822 826anti-parallel
Strand 4
E
541 543anti-parallel
Strand 5
E
756 758anti-parallel
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There are 8 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
548 550first strand
Strand 2
E
561 563anti-parallel
Strand 3
E
569 572anti-parallel
Strand 4
E
585 589anti-parallel
Strand 5
E
791 799anti-parallel
Strand 6
E
764 773anti-parallel
Strand 7
E
619 621anti-parallel
Strand 8
E
609 610anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
742 746first strand
Strand 2
E
625 631anti-parallel
Strand 3
E
600 603anti-parallel
Strand 4
E
780 781anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
633 636first strand
Strand 2
E
679 685anti-parallel
Strand 3
E
668 674anti-parallel
Strand 4
E
651 652anti-parallel
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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
689 691first strand
Strand 2
E
735 740anti-parallel
Strand 3
E
722 727anti-parallel
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There are 5 strands in AG6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
442 444first strand
Strand 2
F
971 974anti-parallel
Strand 3
F
956 958anti-parallel
Strand 4
F
468 472anti-parallel
Strand 5
F
459 462anti-parallel
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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
898 902first strand
Strand 2
F
941 948anti-parallel
Strand 3
F
476 481anti-parallel
Strand 4
F
951 952anti-parallel
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There are 6 strands in AG8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
915 916first strand
Strand 2
F
932 937anti-parallel
Strand 3
F
941 948anti-parallel
Strand 4
F
476 481anti-parallel
Strand 5
F
449 453anti-parallel
Strand 6
F
965 966anti-parallel
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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
484 487first strand
Strand 2
F
889 894anti-parallel
Strand 3
F
875 877anti-parallel
Strand 4
F
501 502anti-parallel
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There are 4 strands in AH1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
493 494first strand
Strand 2
F
509 511anti-parallel
Strand 3
F
867 869anti-parallel
Strand 4
F
846 847anti-parallel
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There are 2 strands in AH2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
533 535first strand
Strand 2
F
831 833anti-parallel
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There are 2 strands in AH3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
921 923first strand
Strand 2
F
926 927anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il