Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EMR entry

There are 2 chains in PDB entry 8EMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33ARG 944
B
 LEU 25LYS 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8EMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
371 384Right-handed alpha
Helix 4
AA4
A
390 395Right-handed 310
Helix 5
AA5
A
405 419Right-handed alpha
Helix 6
AA6
A
429 433Right-handed 310
Helix 7
AA7
A
448 459Right-handed alpha
Helix 8
AA8
A
477 487Right-handed alpha
Helix 9
AA9
A
514 524Right-handed alpha
Helix 10
AB1
A
571 573Right-handed 310
Helix 11
AB2
A
574 590Right-handed alpha
Helix 12
AB3
A
607 611Right-handed 310
Helix 13
AB4
A
622 638Right-handed alpha
Helix 14
AB5
A
656 668Right-handed alpha
Helix 15
AB6
A
690 707Right-handed alpha
Helix 16
AB7
A
707 722Right-handed alpha
Helix 17
AB8
A
728 733Right-handed alpha
Helix 18
AB9
A
737 742Right-handed 310
Helix 19
AC1
A
821 826Right-handed 310
Helix 20
AC2
A
852 857Right-handed alpha
Helix 21
AC3
B
47 51Right-handed 310
Helix 22
AC4
B
90 92Right-handed 310
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There are 11 sheets in PDB entry 8EMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
125 126anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 69first strand
Strand 2
A
74 80anti-parallel
Strand 3
A
86 94anti-parallel
Strand 4
A
98 105anti-parallel
Strand 5
A
362 367anti-parallel
Strand 6
A
310 315anti-parallel
Strand 7
A
301 305anti-parallel
Strand 8
A
255 258anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
244 249anti-parallel
Strand 7
A
177 178anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
147 152anti-parallel
Strand 4
A
157 162anti-parallel
Strand 5
A
165 170anti-parallel
Strand 6
A
244 249anti-parallel
Strand 7
A
352 357anti-parallel
Strand 8
A
321 326anti-parallel
Strand 9
A
277 279anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
234 235anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 540first strand
Strand 2
A
462 466parallel
Strand 3
A
425 427parallel
Strand 4
A
397 398parallel
Strand 5
A
674 675parallel
Strand 6
A
647 648parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
726 727first strand
Strand 2
A
746 748anti-parallel
Strand 3
A
752 754anti-parallel
Strand 4
A
802 805anti-parallel
Strand 5
A
775 778anti-parallel
Strand 6
A
784 786anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 769first strand
Strand 2
A
789 794anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
808 812first strand
Strand 2
A
828 833anti-parallel
Strand 3
A
888 895parallel
Strand 4
A
925 934anti-parallel
Strand 5
A
917 920anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 846first strand
Strand 2
A
861 868anti-parallel
Strand 3
A
871 876anti-parallel
Strand 4
A
940 943anti-parallel
Strand 5
A
903 906anti-parallel
Strand 6
A
913 914anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
86 88anti-parallel
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