Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EMS entry

There are 2 chains in PDB entry 8EMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 24GLU 828
A
 VAL 24GLU 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 84 helices in PDB entry 8EMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
24 37Right-handed alpha
Helix 2
AA2
B
47 72Right-handed alpha
Helix 3
AA3
B
94 103Right-handed alpha
Helix 4
AA4
B
105 116Right-handed alpha
Helix 5
AA5
B
118 126Right-handed alpha
Helix 6
AA6
B
134 150Right-handed alpha
Helix 7
AA7
B
193 197Right-handed 310
Helix 8
AA8
B
263 268Right-handed alpha
Helix 9
AA9
B
268 274Right-handed alpha
Helix 10
AB1
B
292 313Right-handed alpha
Helix 11
AB2
B
325 329Right-handed 310
Helix 12
AB3
B
340 343Right-handed 310
Helix 13
AB4
B
344 355Right-handed alpha
Helix 14
AB5
B
360 371Right-handed alpha
Helix 15
AB6
B
380 384Right-handed 310
Helix 16
AB7
B
389 396Right-handed alpha
Helix 17
AB8
B
396 418Right-handed alpha
Helix 18
AB9
B
422 428Right-handed alpha
Helix 19
AC1
B
441 448Right-handed alpha
Helix 20
AC2
B
456 466Right-handed alpha
Helix 21
AC3
B
468 475Right-handed alpha
Helix 22
AC4
B
487 492Right-handed alpha
Helix 23
AC5
B
496 508Right-handed alpha
Helix 24
AC6
B
509 513Right-handed 310
Helix 25
AC7
B
514 525Right-handed 310
Helix 26
AC8
B
527 554Right-handed alpha
Helix 27
AC9
B
575 593Right-handed alpha
Helix 28
AD1
B
613 632Right-handed alpha
Helix 29
AD2
B
649 657Right-handed alpha
Helix 30
AD3
B
658 660Right-handed 310
Helix 31
AD4
B
676 684Right-handed alpha
Helix 32
AD5
B
694 704Right-handed alpha
Helix 33
AD6
B
705 708Right-handed 310
Helix 34
AD7
B
714 725Right-handed alpha
Helix 35
AD8
B
727 734Right-handed alpha
Helix 36
AD9
B
735 747Right-handed alpha
Helix 37
AE1
B
758 767Right-handed alpha
Helix 38
AE2
B
773 775Right-handed 310
Helix 39
AE3
B
776 792Right-handed alpha
Helix 40
AE4
B
793 807Right-handed alpha
Helix 41
AE5
B
808 811Right-handed 310
Helix 42
AE6
B
812 824Right-handed alpha
Helix 43
AE7
A
25 37Right-handed alpha
Helix 44
AE8
A
47 72Right-handed alpha
Helix 45
AE9
A
94 103Right-handed alpha
Helix 46
AF1
A
105 116Right-handed alpha
Helix 47
AF2
A
118 126Right-handed alpha
Helix 48
AF3
A
134 150Right-handed alpha
Helix 49
AF4
A
193 197Right-handed 310
Helix 50
AF5
A
263 268Right-handed alpha
Helix 51
AF6
A
268 274Right-handed alpha
Helix 52
AF7
A
292 313Right-handed alpha
Helix 53
AF8
A
325 329Right-handed 310
Helix 54
AF9
A
340 343Right-handed 310
Helix 55
AG1
A
344 355Right-handed alpha
Helix 56
AG2
A
360 371Right-handed alpha
Helix 57
AG3
A
380 384Right-handed 310
Helix 58
AG4
A
389 396Right-handed alpha
Helix 59
AG5
A
396 418Right-handed alpha
Helix 60
AG6
A
422 428Right-handed alpha
Helix 61
AG7
A
441 448Right-handed alpha
Helix 62
AG8
A
456 466Right-handed alpha
Helix 63
AG9
A
468 475Right-handed alpha
Helix 64
AH1
A
487 492Right-handed alpha
Helix 65
AH2
A
496 508Right-handed alpha
Helix 66
AH3
A
509 513Right-handed 310
Helix 67
AH4
A
514 525Right-handed 310
Helix 68
AH5
A
527 554Right-handed alpha
Helix 69
AH6
A
575 593Right-handed alpha
Helix 70
AH7
A
613 632Right-handed alpha
Helix 71
AH8
A
649 657Right-handed alpha
Helix 72
AH9
A
658 660Right-handed 310
Helix 73
AI1
A
676 684Right-handed alpha
Helix 74
AI2
A
694 704Right-handed alpha
Helix 75
AI3
A
705 708Right-handed 310
Helix 76
AI4
A
714 725Right-handed alpha
Helix 77
AI5
A
727 734Right-handed alpha
Helix 78
AI6
A
735 747Right-handed alpha
Helix 79
AI7
A
758 767Right-handed alpha
Helix 80
AI8
A
773 775Right-handed 310
Helix 81
AI9
A
776 792Right-handed alpha
Helix 82
AJ1
A
793 807Right-handed alpha
Helix 83
AJ2
A
808 811Right-handed 310
Helix 84
AJ3
A
812 824Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8EMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 202first strand
Strand 2
B
219 231anti-parallel
Strand 3
B
238 246anti-parallel
Strand 4
B
154 159parallel
Strand 5
B
81 85parallel
Strand 6
B
333 337parallel
Strand 7
B
372 375parallel
Strand 8
B
452 453parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 171first strand
Strand 2
B
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 208first strand
Strand 2
B
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
438 440anti-parallel
Strand 3
B
431 432anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
640 643first strand
Strand 2
B
601 606parallel
Strand 3
B
562 567parallel
Strand 4
B
662 665parallel
Strand 5
B
687 690parallel
Strand 6
B
709 710parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 202first strand
Strand 2
A
219 231anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
154 159parallel
Strand 5
A
81 85parallel
Strand 6
A
333 337parallel
Strand 7
A
372 375parallel
Strand 8
A
452 453parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 171first strand
Strand 2
A
174 178anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
213 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
438 440anti-parallel
Strand 3
A
431 432anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 643first strand
Strand 2
A
601 606parallel
Strand 3
A
562 567parallel
Strand 4
A
662 665parallel
Strand 5
A
687 690parallel
Strand 6
A
709 710parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il