Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EMT entry

There are 2 chains in PDB entry 8EMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 6	VAL 1336
A	ALA 4	VAL 1336

There are 89 helices in PDB entry 8EMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	34	Right-handed alpha
Helix 2	AA2	B	77	81	Right-handed 310
Helix 3	AA3	B	88	92	Right-handed 310
Helix 4	AA4	B	100	109	Right-handed alpha
Helix 5	AA5	B	117	132	Right-handed alpha
Helix 6	AA6	B	136	144	Right-handed alpha
Helix 7	AA7	B	154	162	Right-handed alpha
Helix 8	AA8	B	219	229	Right-handed alpha
Helix 9	AA9	B	248	258	Right-handed alpha
Helix 10	AB1	B	271	277	Right-handed alpha
Helix 11	AB2	B	311	323	Right-handed alpha
Helix 12	AB3	B	332	342	Right-handed alpha
Helix 13	AB4	B	346	353	Right-handed alpha
Helix 14	AB5	B	354	362	Right-handed alpha
Helix 15	AB6	B	368	373	Right-handed alpha
Helix 16	AB7	B	393	398	Right-handed alpha
Helix 17	AB8	B	474	480	Right-handed alpha
Helix 18	AB9	B	486	501	Right-handed alpha
Helix 19	AC1	B	511	538	Right-handed alpha
Helix 20	AC2	B	588	594	Right-handed alpha
Helix 21	AC3	B	629	634	Right-handed alpha
Helix 22	AC4	B	682	691	Right-handed alpha
Helix 23	AC5	B	706	710	Right-handed 310
Helix 24	AC6	B	727	735	Right-handed alpha
Helix 25	AC7	B	777	790	Right-handed alpha
Helix 26	AC8	B	811	828	Right-handed alpha
Helix 27	AC9	B	837	845	Right-handed alpha
Helix 28	AD1	B	884	893	Right-handed alpha
Helix 29	AD2	B	924	944	Right-handed alpha
Helix 30	AD3	B	946	953	Right-handed alpha
Helix 31	AD4	B	970	984	Right-handed alpha
Helix 32	AD5	B	985	998	Right-handed alpha
Helix 33	AD6	B	1021	1025	Right-handed 310
Helix 34	AD7	B	1050	1064	Right-handed alpha
Helix 35	AD8	B	1066	1068	Right-handed 310
Helix 36	AD9	B	1090	1110	Right-handed alpha
Helix 37	AE1	B	1110	1117	Right-handed alpha
Helix 38	AE2	B	1121	1132	Right-handed alpha
Helix 39	AE3	B	1196	1217	Right-handed alpha
Helix 40	AE4	B	1240	1244	Right-handed 310
Helix 41	AE5	B	1261	1265	Right-handed 310
Helix 42	AE6	B	1273	1275	Right-handed 310
Helix 43	AE7	B	1276	1294	Right-handed alpha
Helix 44	AE8	B	1307	1315	Right-handed alpha
Helix 45	AE9	B	1319	1323	Right-handed 310
Helix 46	AF1	A	27	34	Right-handed alpha
Helix 47	AF2	A	77	82	Right-handed 310
Helix 48	AF3	A	100	109	Right-handed alpha
Helix 49	AF4	A	117	132	Right-handed alpha
Helix 50	AF5	A	136	144	Right-handed alpha
Helix 51	AF6	A	154	163	Right-handed alpha
Helix 52	AF7	A	221	226	Right-handed alpha
Helix 53	AF8	A	248	259	Right-handed alpha
Helix 54	AF9	A	270	277	Right-handed alpha
Helix 55	AG1	A	311	325	Right-handed alpha
Helix 56	AG2	A	327	330	Right-handed 310
Helix 57	AG3	A	331	342	Right-handed alpha
Helix 58	AG4	A	354	362	Right-handed alpha
Helix 59	AG5	A	368	373	Right-handed alpha
Helix 60	AG6	A	395	399	Right-handed 310
Helix 61	AG7	A	474	481	Right-handed alpha
Helix 62	AG8	A	486	501	Right-handed alpha
Helix 63	AG9	A	511	538	Right-handed alpha
Helix 64	AH1	A	588	593	Right-handed alpha
Helix 65	AH2	A	629	634	Right-handed alpha
Helix 66	AH3	A	648	652	Right-handed 310
Helix 67	AH4	A	659	663	Right-handed 310
Helix 68	AH5	A	682	692	Right-handed alpha
Helix 69	AH6	A	706	712	Right-handed alpha
Helix 70	AH7	A	727	733	Right-handed alpha
Helix 71	AH8	A	777	789	Right-handed alpha
Helix 72	AH9	A	811	828	Right-handed alpha
Helix 73	AI1	A	837	845	Right-handed alpha
Helix 74	AI2	A	884	893	Right-handed alpha
Helix 75	AI3	A	924	943	Right-handed alpha
Helix 76	AI4	A	946	955	Right-handed alpha
Helix 77	AI5	A	970	985	Right-handed alpha
Helix 78	AI6	A	985	997	Right-handed alpha
Helix 79	AI7	A	1020	1024	Right-handed 310
Helix 80	AI8	A	1050	1063	Right-handed alpha
Helix 81	AI9	A	1066	1068	Right-handed 310
Helix 82	AJ1	A	1090	1110	Right-handed alpha
Helix 83	AJ2	A	1110	1116	Right-handed alpha
Helix 84	AJ3	A	1121	1132	Right-handed alpha
Helix 85	AJ4	A	1196	1217	Right-handed alpha
Helix 86	AJ5	A	1271	1276	Right-handed alpha
Helix 87	AJ6	A	1276	1292	Right-handed alpha
Helix 88	AJ7	A	1307	1315	Right-handed alpha
Helix 89	AJ8	A	1317	1323	Right-handed alpha

There are 24 sheets in PDB entry 8EMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	7	11	anti-parallel
Strand 3	B	85	87	parallel
Strand 4	B	53	60	anti-parallel
Strand 5	B	65	72	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	242	245	anti-parallel
Strand 3	B	284	286	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	303	307	anti-parallel
Strand 3	B	410	416	anti-parallel
Strand 4	B	378	383	anti-parallel
Strand 5	B	386	391	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	430	first strand
Strand 2	B	441	448	anti-parallel
Strand 3	B	458	464	anti-parallel
Strand 4	B	471	472	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	616	first strand
Strand 2	B	674	680	anti-parallel
Strand 3	B	641	643	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	668	first strand
Strand 2	B	622	628	anti-parallel
Strand 3	B	694	699	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	725	first strand
Strand 2	B	903	910	anti-parallel
Strand 3	B	865	875	parallel
Strand 4	B	851	859	anti-parallel
Strand 5	B	737	745	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	835	first strand
Strand 2	B	757	762	anti-parallel
Strand 3	B	769	773	anti-parallel
Strand 4	B	796	800	parallel
Strand 5	B	1075	1076	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	959	961	first strand
Strand 2	B	967	969	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1003	1016	first strand
Strand 2	B	1161	1174	anti-parallel
Strand 3	B	1180	1190	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1070	1072	first strand
Strand 2	B	1038	1042	parallel
Strand 3	B	1026	1032	anti-parallel
Strand 4	B	1137	1142	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1148	1150	first strand
Strand 2	B	1155	1157	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	18	first strand
Strand 2	A	7	11	anti-parallel
Strand 3	A	85	87	parallel
Strand 4	A	53	59	anti-parallel
Strand 5	A	66	72	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	237	first strand
Strand 2	A	242	245	anti-parallel
Strand 3	A	284	286	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	303	307	anti-parallel
Strand 3	A	411	417	anti-parallel
Strand 4	A	378	383	anti-parallel
Strand 5	A	386	391	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	431	first strand
Strand 2	A	439	448	anti-parallel
Strand 3	A	458	464	anti-parallel
Strand 4	A	471	472	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	638	642	first strand
Strand 2	A	676	680	anti-parallel
Strand 3	A	610	615	anti-parallel
Strand 4	A	832	835	parallel
Strand 5	A	757	762	anti-parallel
Strand 6	A	769	773	anti-parallel
Strand 7	A	796	800	parallel
Strand 8	A	1075	1076	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	667	668	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	628	first strand
Strand 2	A	694	695	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	725	first strand
Strand 2	A	903	911	anti-parallel
Strand 3	A	865	877	parallel
Strand 4	A	851	859	anti-parallel
Strand 5	A	737	745	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	959	960	first strand
Strand 2	A	968	969	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1017	first strand
Strand 2	A	1159	1174	anti-parallel
Strand 3	A	1180	1190	anti-parallel
Strand 4	A	1247	1252	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1072	first strand
Strand 2	A	1038	1042	parallel
Strand 3	A	1026	1032	anti-parallel
Strand 4	A	1137	1142	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1148	1150	first strand
Strand 2	A	1155	1157	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMT