Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EMV entry

There is 1 chain in PDB entry 8EMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12GLY 881
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8EMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 25Right-handed alpha
Helix 2
AA2
A
76 78Right-handed 310
Helix 3
AA3
A
83 91Right-handed alpha
Helix 4
AA4
A
127 140Right-handed alpha
Helix 5
AA5
A
148 163Right-handed alpha
Helix 6
AA6
A
171 179Right-handed alpha
Helix 7
AA7
A
183 194Right-handed alpha
Helix 8
AA8
A
204 208Right-handed 310
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
223 233Right-handed alpha
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
268 280Right-handed alpha
Helix 13
AB4
A
282 288Right-handed alpha
Helix 14
AB5
A
292 300Right-handed alpha
Helix 15
AB6
A
322 324Right-handed 310
Helix 16
AB7
A
347 357Right-handed alpha
Helix 17
AB8
A
389 399Right-handed alpha
Helix 18
AB9
A
418 434Right-handed alpha
Helix 19
AC1
A
605 611Right-handed alpha
Helix 20
AC2
A
622 632Right-handed alpha
Helix 21
AC3
A
632 641Right-handed alpha
Helix 22
AC4
A
661 666Right-handed alpha
Helix 23
AC5
A
680 690Right-handed alpha
Helix 24
AC6
A
702 706Right-handed 310
Helix 25
AC7
A
814 816Right-handed 310
Helix 26
AC8
A
868 881Right-handed alpha
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There are 6 sheets in PDB entry 8EMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
41 45anti-parallel
Strand 4
A
26 30anti-parallel
Strand 5
A
116 122anti-parallel
Strand 6
A
103 108anti-parallel
Strand 7
A
69 74anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
698 700anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
376 377anti-parallel
Strand 3
A
360 366anti-parallel
Strand 4
A
408 413parallel
Strand 5
A
463 466parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
616 621parallel
Strand 3
A
644 648parallel
Strand 4
A
671 672parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 786first strand
Strand 2
A
726 736anti-parallel
Strand 3
A
832 846anti-parallel
Strand 4
A
819 826anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 763first strand
Strand 2
A
745 752anti-parallel
Strand 3
A
793 800anti-parallel
Strand 4
A
805 812anti-parallel
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