Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EMW entry

There are 4 chains in PDB entry 8EMW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 13	GLY 881
B	LEU 4	ASN 340
G	SER 8	ARG 62
C	SER 2	ASN 155

There are 34 helices in PDB entry 8EMW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	24	Right-handed alpha
Helix 2	AA2	A	65	67	Right-handed 310
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	83	91	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	150	155	Right-handed alpha
Helix 8	AA8	A	157	163	Right-handed alpha
Helix 9	AA9	A	172	179	Right-handed alpha
Helix 10	AB1	A	182	194	Right-handed alpha
Helix 11	AB2	A	209	221	Right-handed alpha
Helix 12	AB3	A	223	233	Right-handed alpha
Helix 13	AB4	A	243	254	Right-handed alpha
Helix 14	AB5	A	271	280	Right-handed alpha
Helix 15	AB6	A	293	300	Right-handed alpha
Helix 16	AB7	A	347	357	Right-handed alpha
Helix 17	AB8	A	389	398	Right-handed alpha
Helix 18	AB9	A	418	433	Right-handed alpha
Helix 19	AC1	A	434	437	Right-handed 310
Helix 20	AC2	A	589	593	Right-handed 310
Helix 21	AC3	A	604	612	Right-handed alpha
Helix 22	AC4	A	632	640	Right-handed alpha
Helix 23	AC5	A	661	666	Right-handed alpha
Helix 24	AC6	A	702	706	Right-handed 310
Helix 25	AC7	A	868	881	Right-handed alpha
Helix 26	AC8	B	5	26	Right-handed alpha
Helix 27	AC9	B	29	34	Right-handed alpha
Helix 28	AD1	B	35	37	Right-handed 310
Helix 29	AD2	G	9	21	Right-handed alpha
Helix 30	AD3	G	29	43	Right-handed alpha
Helix 31	AD4	C	7	12	Right-handed alpha
Helix 32	AD5	C	12	26	Right-handed alpha
Helix 33	AD6	D	9	21	Right-handed alpha
Helix 34	AD7	D	29	44	Right-handed alpha

There are 30 sheets in PDB entry 8EMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	41	45	anti-parallel
Strand 3	A	52	55	anti-parallel
Strand 4	A	61	62	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	103	108	anti-parallel
Strand 3	A	119	121	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	202	203	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	291	292	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	698	700	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	331	first strand
Strand 2	A	673	674	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	376	377	anti-parallel
Strand 3	A	387	388	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	411	first strand
Strand 2	A	463	466	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	621	first strand
Strand 2	A	647	648	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	786	first strand
Strand 2	A	726	734	anti-parallel
Strand 3	A	839	842	anti-parallel
Strand 4	A	819	821	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	786	first strand
Strand 2	A	726	734	anti-parallel
Strand 3	A	845	846	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	752	first strand
Strand 2	A	793	800	anti-parallel
Strand 3	A	805	809	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	826	first strand
Strand 2	A	832	837	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	317	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	61	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	157	160	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	307	308	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	69	72	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	89	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	63	first strand
Strand 2	C	69	72	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	93	94	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	139	140	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	234	first strand
Strand 2	C	240	243	anti-parallel
Strand 3	C	253	254	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	276	278	first strand
Strand 2	C	284	287	anti-parallel
Strand 3	C	295	298	anti-parallel
Strand 4	C	303	307	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	320	first strand
Strand 2	C	327	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EMW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EMW