Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOA entry

There are 3 chains in PDB entry 8EOA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ASP 691
B	GLU 11	ASP 691
C	PHE 1	ASN 165

There are 55 helices in PDB entry 8EOA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	35	37	Right-handed 310
Helix 3	AA3	A	38	60	Right-handed alpha
Helix 4	AA4	A	61	66	Right-handed 310
Helix 5	AA5	A	94	101	Right-handed alpha
Helix 6	AA6	A	108	116	Right-handed alpha
Helix 7	AA7	A	132	138	Right-handed 310
Helix 8	AA8	A	190	193	Right-handed 310
Helix 9	AA9	A	194	205	Right-handed alpha
Helix 10	AB1	A	287	291	Right-handed 310
Helix 11	AB2	A	297	310	Right-handed alpha
Helix 12	AB3	A	371	375	Right-handed 310
Helix 13	AB4	A	397	420	Right-handed alpha
Helix 14	AB5	A	422	444	Right-handed alpha
Helix 15	AB6	A	447	454	Right-handed alpha
Helix 16	AB7	A	469	476	Right-handed alpha
Helix 17	AB8	A	490	496	Right-handed alpha
Helix 18	AB9	A	500	506	Right-handed alpha
Helix 19	AC1	A	516	525	Right-handed alpha
Helix 20	AC2	A	546	560	Right-handed alpha
Helix 21	AC3	A	560	571	Right-handed alpha
Helix 22	AC4	A	599	607	Right-handed alpha
Helix 23	AC5	A	613	618	Right-handed alpha
Helix 24	AC6	A	632	645	Right-handed alpha
Helix 25	AC7	A	648	666	Right-handed alpha
Helix 26	AC8	A	672	689	Right-handed alpha
Helix 27	AC9	B	20	31	Right-handed alpha
Helix 28	AD1	B	35	37	Right-handed 310
Helix 29	AD2	B	38	60	Right-handed alpha
Helix 30	AD3	B	61	66	Right-handed 310
Helix 31	AD4	B	94	101	Right-handed alpha
Helix 32	AD5	B	108	116	Right-handed alpha
Helix 33	AD6	B	132	138	Right-handed 310
Helix 34	AD7	B	190	193	Right-handed 310
Helix 35	AD8	B	194	206	Right-handed alpha
Helix 36	AD9	B	297	310	Right-handed alpha
Helix 37	AE1	B	371	375	Right-handed 310
Helix 38	AE2	B	397	420	Right-handed alpha
Helix 39	AE3	B	422	444	Right-handed alpha
Helix 40	AE4	B	447	452	Right-handed alpha
Helix 41	AE5	B	469	476	Right-handed alpha
Helix 42	AE6	B	490	496	Right-handed alpha
Helix 43	AE7	B	499	506	Right-handed alpha
Helix 44	AE8	B	516	525	Right-handed alpha
Helix 45	AE9	B	546	571	Right-handed alpha
Helix 46	AF1	B	599	608	Right-handed alpha
Helix 47	AF2	B	616	621	Right-handed alpha
Helix 48	AF3	B	632	645	Right-handed alpha
Helix 49	AF4	B	648	667	Right-handed alpha
Helix 50	AF5	B	672	689	Right-handed alpha
Helix 51	AF6	C	57	61	Right-handed alpha
Helix 52	AF7	C	74	83	Right-handed alpha
Helix 53	AF8	C	101	112	Right-handed alpha
Helix 54	AF9	C	121	133	Right-handed alpha
Helix 55	AG1	C	139	147	Right-handed alpha

There are 13 sheets in PDB entry 8EOA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	219	parallel
Strand 9	B	276	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	73	78	parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	178	185	anti-parallel
Strand 5	A	140	148	anti-parallel
Strand 6	A	155	159	anti-parallel
Strand 7	A	164	169	anti-parallel
Strand 8	B	13	16	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	276	278	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	361	364	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	456	459	anti-parallel
Strand 3	A	511	513	anti-parallel
Strand 4	A	482	487	parallel
Strand 5	A	531	535	parallel
Strand 6	A	527	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	625	628	parallel
Strand 3	A	589	592	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	323	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	361	364	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	456	459	anti-parallel
Strand 3	B	510	513	anti-parallel
Strand 4	B	482	487	parallel
Strand 5	B	531	535	parallel
Strand 6	B	527	528	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	625	628	parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	89	94	anti-parallel
Strand 3	C	152	161	anti-parallel
Strand 4	C	37	46	anti-parallel
Strand 5	C	53	56	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	89	94	anti-parallel
Strand 3	C	152	161	anti-parallel
Strand 4	C	37	46	anti-parallel
Strand 5	C	65	67	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOA