Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOB entry

There are 2 chains in PDB entry 8EOB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 11	ILE 690
B	GLU 11	ILE 690

There are 49 helices in PDB entry 8EOB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	37	60	Right-handed alpha
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	94	101	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	132	138	Right-handed 310
Helix 7	AA7	A	189	193	Right-handed 310
Helix 8	AA8	A	194	205	Right-handed alpha
Helix 9	AA9	A	287	291	Right-handed 310
Helix 10	AB1	A	297	310	Right-handed alpha
Helix 11	AB2	A	371	375	Right-handed 310
Helix 12	AB3	A	397	420	Right-handed alpha
Helix 13	AB4	A	422	444	Right-handed alpha
Helix 14	AB5	A	447	454	Right-handed alpha
Helix 15	AB6	A	469	476	Right-handed alpha
Helix 16	AB7	A	490	496	Right-handed alpha
Helix 17	AB8	A	500	506	Right-handed alpha
Helix 18	AB9	A	516	525	Right-handed alpha
Helix 19	AC1	A	546	560	Right-handed alpha
Helix 20	AC2	A	560	571	Right-handed alpha
Helix 21	AC3	A	599	607	Right-handed alpha
Helix 22	AC4	A	613	620	Right-handed alpha
Helix 23	AC5	A	632	645	Right-handed alpha
Helix 24	AC6	A	648	666	Right-handed alpha
Helix 25	AC7	A	672	689	Right-handed alpha
Helix 26	AC8	B	20	31	Right-handed alpha
Helix 27	AC9	B	35	37	Right-handed 310
Helix 28	AD1	B	38	60	Right-handed alpha
Helix 29	AD2	B	61	66	Right-handed 310
Helix 30	AD3	B	94	101	Right-handed alpha
Helix 31	AD4	B	108	116	Right-handed alpha
Helix 32	AD5	B	132	138	Right-handed 310
Helix 33	AD6	B	190	193	Right-handed 310
Helix 34	AD7	B	194	205	Right-handed alpha
Helix 35	AD8	B	287	291	Right-handed 310
Helix 36	AD9	B	297	310	Right-handed alpha
Helix 37	AE1	B	398	420	Right-handed alpha
Helix 38	AE2	B	422	444	Right-handed alpha
Helix 39	AE3	B	447	452	Right-handed alpha
Helix 40	AE4	B	469	476	Right-handed alpha
Helix 41	AE5	B	490	496	Right-handed alpha
Helix 42	AE6	B	499	506	Right-handed alpha
Helix 43	AE7	B	515	525	Right-handed alpha
Helix 44	AE8	B	546	571	Right-handed alpha
Helix 45	AE9	B	599	608	Right-handed alpha
Helix 46	AF1	B	616	621	Right-handed alpha
Helix 47	AF2	B	632	645	Right-handed alpha
Helix 48	AF3	B	648	667	Right-handed alpha
Helix 49	AF4	B	672	689	Right-handed alpha

There are 11 sheets in PDB entry 8EOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	219	parallel
Strand 9	B	276	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	73	78	parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	178	185	anti-parallel
Strand 5	A	140	148	anti-parallel
Strand 6	A	155	159	anti-parallel
Strand 7	A	164	169	anti-parallel
Strand 8	B	13	16	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	276	278	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	323	first strand
Strand 2	A	329	336	anti-parallel
Strand 3	A	378	383	anti-parallel
Strand 4	A	353	357	parallel
Strand 5	A	361	364	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	456	459	anti-parallel
Strand 3	A	510	513	anti-parallel
Strand 4	A	482	487	parallel
Strand 5	A	531	535	parallel
Strand 6	A	527	528	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	580	first strand
Strand 2	A	625	628	parallel
Strand 3	A	589	592	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	323	first strand
Strand 2	B	329	336	anti-parallel
Strand 3	B	378	383	anti-parallel
Strand 4	B	353	357	parallel
Strand 5	B	361	364	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	456	459	anti-parallel
Strand 3	B	510	513	anti-parallel
Strand 4	B	482	487	parallel
Strand 5	B	531	535	parallel
Strand 6	B	527	528	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	580	first strand
Strand 2	B	625	628	parallel
Strand 3	B	589	592	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOB