Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOF entry

There are 9 chains in PDB entry 8EOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	ASN 30	GLU 1151
D	LEU 2	ALA 1282
E	GLY 27	GLY 109
G	LYS 3	ARG 112
T	C 1	C 38
N	G 3	G 40
R	C 2	A 30

There are101 helices in PDB entry 8EOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	43	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	203	219	Right-handed alpha
Helix 4	AA4	B	34	44	Right-handed alpha
Helix 5	AA5	B	72	80	Right-handed alpha
Helix 6	AA6	B	106	110	Right-handed 310
Helix 7	AA7	B	203	208	Right-handed alpha
Helix 8	AA8	C	54	66	Right-handed alpha
Helix 9	AA9	C	67	77	Right-handed alpha
Helix 10	AB1	C	84	94	Right-handed alpha
Helix 11	AB2	C	118	125	Right-handed alpha
Helix 12	AB3	C	226	229	Right-handed 310
Helix 13	AB4	C	233	242	Right-handed alpha
Helix 14	AB5	C	244	252	Right-handed alpha
Helix 15	AB6	C	256	263	Right-handed alpha
Helix 16	AB7	C	269	282	Right-handed alpha
Helix 17	AB8	C	288	296	Right-handed alpha
Helix 18	AB9	C	309	320	Right-handed alpha
Helix 19	AC1	C	334	351	Right-handed alpha
Helix 20	AC2	C	380	404	Right-handed alpha
Helix 21	AC3	C	413	417	Right-handed 310
Helix 22	AC4	C	420	431	Right-handed alpha
Helix 23	AC5	C	444	452	Right-handed alpha
Helix 24	AC6	C	476	480	Right-handed 310
Helix 25	AC7	C	535	539	Right-handed 310
Helix 26	AC8	C	582	587	Right-handed 310
Helix 27	AC9	C	590	594	Right-handed 310
Helix 28	AD1	C	596	600	Right-handed 310
Helix 29	AD2	C	601	612	Right-handed alpha
Helix 30	AD3	C	632	637	Right-handed alpha
Helix 31	AD4	C	739	744	Right-handed alpha
Helix 32	AD5	C	928	943	Right-handed alpha
Helix 33	AD6	C	953	957	Right-handed 310
Helix 34	AD7	C	981	989	Right-handed alpha
Helix 35	AD8	C	1036	1040	Right-handed 310
Helix 36	AD9	C	1069	1080	Right-handed alpha
Helix 37	AE1	C	1081	1090	Right-handed alpha
Helix 38	AE2	C	1095	1109	Right-handed alpha
Helix 39	AE3	C	1118	1130	Right-handed alpha
Helix 40	AE4	D	3	7	Right-handed 310
Helix 41	AE5	D	16	24	Right-handed alpha
Helix 42	AE6	D	85	90	Right-handed 310
Helix 43	AE7	D	112	119	Right-handed alpha
Helix 44	AE8	D	121	130	Right-handed alpha
Helix 45	AE9	D	147	184	Right-handed alpha
Helix 46	AF1	D	191	228	Right-handed alpha
Helix 47	AF2	D	237	247	Right-handed alpha
Helix 48	AF3	D	257	267	Right-handed alpha
Helix 49	AF4	D	269	283	Right-handed alpha
Helix 50	AF5	D	287	300	Right-handed alpha
Helix 51	AF6	D	300	305	Right-handed alpha
Helix 52	AF7	D	308	311	Right-handed 310
Helix 53	AF8	D	321	325	Right-handed 310
Helix 54	AF9	D	342	359	Right-handed alpha
Helix 55	AG1	D	363	383	Right-handed alpha
Helix 56	AG2	D	402	406	Right-handed 310
Helix 57	AG3	D	411	417	Right-handed alpha
Helix 58	AG4	D	445	452	Right-handed alpha
Helix 59	AG5	D	452	463	Right-handed alpha
Helix 60	AG6	D	468	478	Right-handed alpha
Helix 61	AG7	D	505	507	Right-handed 310
Helix 62	AG8	D	525	527	Right-handed 310
Helix 63	AG9	D	528	533	Right-handed alpha
Helix 64	AH1	D	548	558	Right-handed alpha
Helix 65	AH2	D	560	564	Right-handed 310
Helix 66	AH3	D	579	589	Right-handed alpha
Helix 67	AH4	D	614	623	Right-handed alpha
Helix 68	AH5	D	643	651	Right-handed alpha
Helix 69	AH6	D	667	675	Right-handed alpha
Helix 70	AH7	D	689	704	Right-handed alpha
Helix 71	AH8	D	705	725	Right-handed alpha
Helix 72	AH9	D	742	763	Right-handed alpha
Helix 73	AI1	D	767	779	Right-handed alpha
Helix 74	AI2	D	780	793	Right-handed alpha
Helix 75	AI3	D	799	804	Right-handed alpha
Helix 76	AI4	D	811	819	Right-handed alpha
Helix 77	AI5	D	845	866	Right-handed alpha
Helix 78	AI6	D	870	881	Right-handed alpha
Helix 79	AI7	D	945	954	Right-handed alpha
Helix 80	AI8	D	964	968	Right-handed 310
Helix 81	AI9	D	976	980	Right-handed alpha
Helix 82	AJ1	D	994	1001	Right-handed alpha
Helix 83	AJ2	D	1004	1008	Right-handed 310
Helix 84	AJ3	D	1027	1036	Right-handed alpha
Helix 85	AJ4	D	1119	1126	Right-handed alpha
Helix 86	AJ5	D	1126	1145	Right-handed alpha
Helix 87	AJ6	D	1151	1160	Right-handed alpha
Helix 88	AJ7	D	1183	1197	Right-handed alpha
Helix 89	AJ8	D	1219	1225	Right-handed alpha
Helix 90	AJ9	D	1228	1240	Right-handed alpha
Helix 91	AK1	D	1247	1255	Right-handed alpha
Helix 92	AK2	D	1260	1263	Right-handed 310
Helix 93	AK3	D	1264	1269	Right-handed alpha
Helix 94	AK4	D	1275	1282	Right-handed alpha
Helix 95	AK5	E	33	37	Right-handed 310
Helix 96	AK6	E	39	44	Right-handed alpha
Helix 97	AK7	E	49	72	Right-handed alpha
Helix 98	AK8	E	90	101	Right-handed alpha
Helix 99	AK9	G	14	28	Right-handed alpha
Helix 100	AL1	G	74	79	Right-handed alpha
Helix 101	AL2	G	102	111	Right-handed alpha

There are 43 sheets in PDB entry 8EOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	192	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	139	143	anti-parallel
Strand 3	A	48	54	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	133	136	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	22	26	anti-parallel
Strand 3	B	190	193	anti-parallel
Strand 4	B	177	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	54	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	197	198	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	185	first strand
Strand 2	C	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	198	199	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	223	224	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	532	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	579	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	568	572	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	683	684	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	917	anti-parallel
Strand 7	C	717	723	parallel
Strand 8	C	1023	1032	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	749	762	anti-parallel
Strand 3	C	865	877	anti-parallel
Strand 4	C	845	854	anti-parallel
Strand 5	C	795	796	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	512	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	D	420	422	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	444	first strand
Strand 2	D	516	517	parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	633	637	parallel
Strand 3	D	662	666	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	903	904	first strand
Strand 2	D	910	911	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1063	first strand
Strand 2	D	1078	1081	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1167	anti-parallel
Strand 3	D	1203	1205	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	66	69	anti-parallel
Strand 3	G	37	39	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	49	first strand
Strand 2	G	52	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOF