Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOG entry

There are 3 chains in PDB entry 8EOG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	PHE 29	GLY 1078
K	PRO 112	ASP 1610
C	TYR 171	HIS 361

There are 99 helices in PDB entry 8EOG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	31	55	Right-handed alpha
Helix 2	AA2	D	56	67	Right-handed alpha
Helix 3	AA3	D	76	112	Right-handed alpha
Helix 4	AA4	D	178	189	Right-handed alpha
Helix 5	AA5	D	191	202	Right-handed alpha
Helix 6	AA6	D	239	242	Right-handed 310
Helix 7	AA7	D	243	251	Right-handed alpha
Helix 8	AA8	D	263	267	Right-handed 310
Helix 9	AA9	D	268	283	Right-handed alpha
Helix 10	AB1	D	313	325	Right-handed alpha
Helix 11	AB2	D	334	346	Right-handed alpha
Helix 12	AB3	D	371	379	Right-handed alpha
Helix 13	AB4	D	398	408	Right-handed alpha
Helix 14	AB5	D	417	425	Right-handed alpha
Helix 15	AB6	D	428	433	Right-handed alpha
Helix 16	AB7	D	433	440	Right-handed alpha
Helix 17	AB8	D	441	444	Right-handed 310
Helix 18	AB9	D	481	484	Right-handed 310
Helix 19	AC1	D	496	501	Right-handed alpha
Helix 20	AC2	D	570	582	Right-handed alpha
Helix 21	AC3	D	626	629	Right-handed 310
Helix 22	AC4	D	639	650	Right-handed alpha
Helix 23	AC5	D	654	658	Right-handed 310
Helix 24	AC6	D	680	692	Right-handed alpha
Helix 25	AC7	D	700	721	Right-handed alpha
Helix 26	AC8	D	747	754	Right-handed 310
Helix 27	AC9	D	759	762	Right-handed 310
Helix 28	AD1	D	763	772	Right-handed alpha
Helix 29	AD2	D	819	829	Right-handed alpha
Helix 30	AD3	D	868	872	Right-handed 310
Helix 31	AD4	D	876	880	Right-handed 310
Helix 32	AD5	D	881	891	Right-handed alpha
Helix 33	AD6	D	1044	1049	Right-handed alpha
Helix 34	AD7	K	113	121	Right-handed alpha
Helix 35	AD8	K	123	144	Right-handed alpha
Helix 36	AD9	K	155	182	Right-handed alpha
Helix 37	AE1	K	188	209	Right-handed alpha
Helix 38	AE2	K	234	241	Right-handed 310
Helix 39	AE3	K	242	251	Right-handed alpha
Helix 40	AE4	K	254	266	Right-handed alpha
Helix 41	AE5	K	268	290	Right-handed alpha
Helix 42	AE6	K	349	361	Right-handed alpha
Helix 43	AE7	K	364	377	Right-handed alpha
Helix 44	AE8	K	380	413	Right-handed alpha
Helix 45	AE9	K	420	440	Right-handed alpha
Helix 46	AF1	K	525	542	Right-handed alpha
Helix 47	AF2	K	552	567	Right-handed alpha
Helix 48	AF3	K	568	577	Right-handed alpha
Helix 49	AF4	K	579	584	Right-handed alpha
Helix 50	AF5	K	589	594	Right-handed alpha
Helix 51	AF6	K	595	609	Right-handed alpha
Helix 52	AF7	K	612	631	Right-handed alpha
Helix 53	AF8	K	637	673	Right-handed alpha
Helix 54	AF9	K	691	705	Right-handed alpha
Helix 55	AG1	K	708	719	Right-handed alpha
Helix 56	AG2	K	729	763	Right-handed alpha
Helix 57	AG3	K	890	898	Right-handed alpha
Helix 58	AG4	K	900	917	Right-handed alpha
Helix 59	AG5	K	927	951	Right-handed alpha
Helix 60	AG6	K	967	980	Right-handed alpha
Helix 61	AG7	K	1002	1011	Right-handed alpha
Helix 62	AG8	K	1012	1016	Right-handed 310
Helix 63	AG9	K	1019	1030	Right-handed alpha
Helix 64	AH1	K	1030	1051	Right-handed alpha
Helix 65	AH2	K	1065	1069	Right-handed 310
Helix 66	AH3	K	1104	1113	Right-handed alpha
Helix 67	AH4	K	1116	1126	Right-handed alpha
Helix 68	AH5	K	1139	1141	Right-handed 310
Helix 69	AH6	K	1142	1158	Right-handed alpha
Helix 70	AH7	K	1159	1171	Right-handed alpha
Helix 71	AH8	K	1183	1194	Right-handed alpha
Helix 72	AH9	K	1210	1215	Right-handed 310
Helix 73	AI1	K	1218	1236	Right-handed alpha
Helix 74	AI2	K	1237	1239	Right-handed 310
Helix 75	AI3	K	1244	1271	Right-handed alpha
Helix 76	AI4	K	1274	1279	Right-handed alpha
Helix 77	AI5	K	1281	1301	Right-handed alpha
Helix 78	AI6	K	1326	1335	Right-handed alpha
Helix 79	AI7	K	1336	1342	Right-handed 310
Helix 80	AI8	K	1344	1356	Right-handed alpha
Helix 81	AI9	K	1358	1382	Right-handed alpha
Helix 82	AJ1	K	1401	1415	Right-handed alpha
Helix 83	AJ2	K	1417	1424	Right-handed alpha
Helix 84	AJ3	K	1451	1478	Right-handed alpha
Helix 85	AJ4	K	1478	1483	Right-handed alpha
Helix 86	AJ5	K	1490	1504	Right-handed alpha
Helix 87	AJ6	K	1513	1522	Right-handed alpha
Helix 88	AJ7	K	1557	1570	Right-handed alpha
Helix 89	AJ8	K	1577	1585	Right-handed alpha
Helix 90	AJ9	K	1586	1589	Right-handed 310
Helix 91	AK1	K	1598	1603	Right-handed 310
Helix 92	AK2	C	190	207	Right-handed alpha
Helix 93	AK3	C	245	263	Right-handed alpha
Helix 94	AK4	C	276	280	Right-handed 310
Helix 95	AK5	C	296	305	Right-handed alpha
Helix 96	AK6	C	306	308	Right-handed 310
Helix 97	AK7	C	309	314	Right-handed alpha
Helix 98	AK8	C	314	328	Right-handed alpha
Helix 99	AK9	C	341	360	Right-handed alpha

There are 16 sheets in PDB entry 8EOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	74	first strand
Strand 2	D	631	635	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	144	145	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	167	169	parallel
Strand 3	D	217	220	anti-parallel
Strand 4	D	208	212	anti-parallel
Strand 5	D	486	495	anti-parallel
Strand 6	D	460	469	anti-parallel
Strand 7	D	447	448	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	167	169	parallel
Strand 3	D	217	220	anti-parallel
Strand 4	D	208	212	anti-parallel
Strand 5	D	486	495	anti-parallel
Strand 6	D	460	469	anti-parallel
Strand 7	D	452	453	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	160	161	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	302	first strand
Strand 2	D	292	296	anti-parallel
Strand 3	D	257	261	parallel
Strand 4	D	359	364	parallel
Strand 5	D	385	391	parallel
Strand 6	D	411	415	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	523	525	first strand
Strand 2	D	513	517	anti-parallel
Strand 3	D	620	624	anti-parallel
Strand 4	D	602	613	anti-parallel
Strand 5	D	586	595	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	540	541	first strand
Strand 2	D	909	910	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	660	661	first strand
Strand 2	D	743	745	anti-parallel
Strand 3	D	731	738	anti-parallel
Strand 4	D	809	818	anti-parallel
Strand 5	D	794	802	anti-parallel
Strand 6	D	776	778	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	861	864	first strand
Strand 2	D	850	855	anti-parallel
Strand 3	D	1016	1021	anti-parallel
Strand 4	D	1008	1009	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	894	906	first strand
Strand 2	D	974	985	anti-parallel
Strand 3	D	1038	1039	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	994	996	first strand
Strand 2	D	1003	1005	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1057	1058	first strand
Strand 2	K	1091	1092	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1072	1075	first strand
Strand 2	K	1085	1088	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	183	first strand
Strand 2	C	288	292	parallel
Strand 3	C	335	337	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	216	first strand
Strand 2	C	267	270	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOG