Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOI entry

There are 11 chains in PDB entry 8EOI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	ARG 993
B	LYS 3	GLN 293
C	PRO 4	PHE 261
E	PRO 3	PRO 103
F	PRO 11	TYR 110
G	ASP 43	THR 158
H	GLY 3	CYS 210
I	GLY 50	GLU 206
K	LEU 109	ASP 1658
J	GLU 38	HIS 361
D	ARG 14	LEU 183

There are115 helices in PDB entry 8EOI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	85	Right-handed 310
Helix 2	AA2	A	448	450	Right-handed 310
Helix 3	AA3	A	463	468	Right-handed alpha
Helix 4	AA4	A	468	473	Right-handed alpha
Helix 5	AA5	A	479	504	Right-handed alpha
Helix 6	AA6	A	521	525	Right-handed 310
Helix 7	AA7	A	655	666	Right-handed alpha
Helix 8	AA8	A	887	894	Right-handed alpha
Helix 9	AA9	A	905	909	Right-handed 310
Helix 10	AB1	A	961	992	Right-handed alpha
Helix 11	AB2	B	11	25	Right-handed alpha
Helix 12	AB3	B	29	44	Right-handed alpha
Helix 13	AB4	B	51	66	Right-handed alpha
Helix 14	AB5	B	68	83	Right-handed alpha
Helix 15	AB6	B	86	100	Right-handed alpha
Helix 16	AB7	B	102	117	Right-handed alpha
Helix 17	AB8	B	121	134	Right-handed alpha
Helix 18	AB9	B	136	151	Right-handed alpha
Helix 19	AC1	B	154	168	Right-handed alpha
Helix 20	AC2	B	170	185	Right-handed alpha
Helix 21	AC3	B	188	203	Right-handed alpha
Helix 22	AC4	B	204	222	Right-handed alpha
Helix 23	AC5	B	225	241	Right-handed alpha
Helix 24	AC6	B	246	275	Right-handed alpha
Helix 25	AC7	B	280	291	Right-handed alpha
Helix 26	AC8	C	9	38	Right-handed alpha
Helix 27	AC9	C	45	65	Right-handed alpha
Helix 28	AD1	C	66	68	Right-handed 310
Helix 29	AD2	C	69	79	Right-handed alpha
Helix 30	AD3	C	114	133	Right-handed alpha
Helix 31	AD4	C	148	153	Right-handed alpha
Helix 32	AD5	C	167	178	Right-handed alpha
Helix 33	AD6	C	179	187	Right-handed alpha
Helix 34	AD7	C	213	227	Right-handed alpha
Helix 35	AD8	C	236	243	Right-handed alpha
Helix 36	AD9	E	4	35	Right-handed alpha
Helix 37	AE1	E	42	61	Right-handed alpha
Helix 38	AE2	E	80	85	Right-handed alpha
Helix 39	AE3	E	87	91	Right-handed 310
Helix 40	AE4	E	96	101	Right-handed alpha
Helix 41	AE5	F	15	45	Right-handed alpha
Helix 42	AE6	F	48	71	Right-handed alpha
Helix 43	AE7	F	73	77	Right-handed 310
Helix 44	AE8	F	81	86	Right-handed alpha
Helix 45	AE9	F	90	108	Right-handed alpha
Helix 46	AF1	G	57	65	Right-handed 310
Helix 47	AF2	H	7	21	Right-handed alpha
Helix 48	AF3	H	67	85	Right-handed alpha
Helix 49	AF4	H	105	117	Right-handed alpha
Helix 50	AF5	H	163	177	Right-handed alpha
Helix 51	AF6	H	178	182	Right-handed 310
Helix 52	AF7	H	185	192	Right-handed alpha
Helix 53	AF8	H	199	209	Right-handed alpha
Helix 54	AF9	I	91	104	Right-handed alpha
Helix 55	AG1	I	134	139	Right-handed alpha
Helix 56	AG2	I	174	178	Right-handed 310
Helix 57	AG3	I	198	206	Right-handed alpha
Helix 58	AG4	K	113	119	Right-handed alpha
Helix 59	AG5	K	123	144	Right-handed alpha
Helix 60	AG6	K	155	182	Right-handed alpha
Helix 61	AG7	K	188	211	Right-handed alpha
Helix 62	AG8	K	235	250	Right-handed 310
Helix 63	AG9	K	254	266	Right-handed alpha
Helix 64	AH1	K	268	290	Right-handed alpha
Helix 65	AH2	K	348	361	Right-handed alpha
Helix 66	AH3	K	364	377	Right-handed alpha
Helix 67	AH4	K	381	412	Right-handed alpha
Helix 68	AH5	K	419	447	Right-handed alpha
Helix 69	AH6	K	507	522	Right-handed alpha
Helix 70	AH7	K	523	542	Right-handed alpha
Helix 71	AH8	K	552	567	Right-handed alpha
Helix 72	AH9	K	568	577	Right-handed alpha
Helix 73	AI1	K	579	584	Right-handed alpha
Helix 74	AI2	K	588	607	Right-handed alpha
Helix 75	AI3	K	614	625	Right-handed alpha
Helix 76	AI4	K	626	633	Right-handed alpha
Helix 77	AI5	K	637	674	Right-handed alpha
Helix 78	AI6	K	691	705	Right-handed alpha
Helix 79	AI7	K	707	719	Right-handed alpha
Helix 80	AI8	K	724	726	Right-handed 310
Helix 81	AI9	K	727	759	Right-handed alpha
Helix 82	AJ1	K	1023	1029	Right-handed alpha
Helix 83	AJ2	K	1035	1071	Right-handed alpha
Helix 84	AJ3	K	1123	1130	Right-handed alpha
Helix 85	AJ4	K	1136	1145	Right-handed alpha
Helix 86	AJ5	K	1160	1192	Right-handed alpha
Helix 87	AJ6	K	1205	1214	Right-handed alpha
Helix 88	AJ7	K	1227	1236	Right-handed alpha
Helix 89	AJ8	K	1238	1257	Right-handed alpha
Helix 90	AJ9	K	1264	1291	Right-handed alpha
Helix 91	AK1	K	1294	1327	Right-handed alpha
Helix 92	AK2	K	1329	1347	Right-handed alpha
Helix 93	AK3	K	1374	1391	Right-handed alpha
Helix 94	AK4	K	1391	1402	Right-handed alpha
Helix 95	AK5	K	1403	1405	Right-handed 310
Helix 96	AK6	K	1407	1430	Right-handed alpha
Helix 97	AK7	K	1449	1462	Right-handed alpha
Helix 98	AK8	K	1465	1472	Right-handed alpha
Helix 99	AK9	K	1499	1526	Right-handed alpha
Helix 100	AL1	K	1538	1553	Right-handed alpha
Helix 101	AL2	K	1561	1566	Right-handed alpha
Helix 102	AL3	K	1586	1593	Right-handed alpha
Helix 103	AL4	K	1605	1618	Right-handed alpha
Helix 104	AL5	K	1625	1635	Right-handed alpha
Helix 105	AL6	K	1648	1653	Right-handed alpha
Helix 106	AL7	J	39	55	Right-handed alpha
Helix 107	AL8	J	120	135	Right-handed alpha
Helix 108	AL9	J	190	208	Right-handed alpha
Helix 109	AM1	J	247	263	Right-handed alpha
Helix 110	AM2	J	276	281	Right-handed 310
Helix 111	AM3	J	296	308	Right-handed alpha
Helix 112	AM4	J	314	327	Right-handed alpha
Helix 113	AM5	J	329	333	Right-handed 310
Helix 114	AM6	J	341	360	Right-handed alpha
Helix 115	AM7	D	164	168	Right-handed 310

There are 26 sheets in PDB entry 8EOI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	942	947	anti-parallel
Strand 3	A	933	938	anti-parallel
Strand 4	A	921	925	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	54	58	anti-parallel
Strand 3	A	62	66	anti-parallel
Strand 4	A	73	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	93	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	106	111	anti-parallel
Strand 4	A	119	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	135	first strand
Strand 2	A	140	147	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	161	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	180	first strand
Strand 2	A	185	191	anti-parallel
Strand 3	A	195	203	anti-parallel
Strand 4	A	209	217	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	230	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	244	249	anti-parallel
Strand 4	A	257	260	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	277	first strand
Strand 2	A	290	296	anti-parallel
Strand 3	A	299	306	anti-parallel
Strand 4	A	309	317	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	327	first strand
Strand 2	A	330	338	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	384	385	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	327	first strand
Strand 2	A	330	338	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	391	394	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	411	first strand
Strand 2	A	417	424	anti-parallel
Strand 3	A	429	433	anti-parallel
Strand 4	A	441	446	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	459	first strand
Strand 2	A	534	540	anti-parallel
Strand 3	A	544	549	anti-parallel
Strand 4	A	555	560	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	576	first strand
Strand 2	A	586	592	anti-parallel
Strand 3	A	599	604	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	632	first strand
Strand 2	A	638	644	anti-parallel
Strand 3	A	649	652	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	699	first strand
Strand 2	A	680	686	anti-parallel
Strand 3	A	669	675	anti-parallel
Strand 4	D	176	181	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	705	711	first strand
Strand 2	A	740	747	anti-parallel
Strand 3	A	756	763	anti-parallel
Strand 4	A	769	776	anti-parallel
Strand 5	I	191	192	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	723	725	first strand
Strand 2	A	731	733	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	778	787	first strand
Strand 2	A	790	797	anti-parallel
Strand 3	A	802	811	anti-parallel
Strand 4	A	832	840	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	849	first strand
Strand 2	A	860	864	anti-parallel
Strand 3	A	870	874	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	165	166	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	89	first strand
Strand 2	G	45	52	anti-parallel
Strand 3	G	138	141	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	66	69	anti-parallel
Strand 3	G	92	99	anti-parallel
Strand 4	G	108	112	anti-parallel
Strand 5	G	118	121	anti-parallel
Strand 6	G	133	134	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	62	first strand
Strand 2	H	26	33	anti-parallel
Strand 3	H	87	95	anti-parallel
Strand 4	H	123	127	parallel
Strand 5	H	141	147	anti-parallel
Strand 6	H	150	153	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	82	87	first strand
Strand 2	I	69	77	anti-parallel
Strand 3	I	51	59	anti-parallel
Strand 4	I	107	113	anti-parallel
Strand 5	I	127	133	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	156	163	first strand
Strand 2	I	143	150	anti-parallel
Strand 3	I	182	188	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	118	first strand
Strand 2	J	103	108	anti-parallel
Strand 3	J	87	100	anti-parallel
Strand 4	J	62	70	anti-parallel
Strand 5	J	172	173	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	212	217	first strand
Strand 2	J	266	271	parallel
Strand 3	J	180	183	parallel
Strand 4	J	288	292	parallel
Strand 5	J	335	337	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOI