Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOJ entry

There are 2 chains in PDB entry 8EOJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 20	GLY 479
B	ASP 31	PHE 882

There are 40 helices in PDB entry 8EOJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	33	41	Right-handed alpha
Helix 2	AA2	A	53	73	Right-handed alpha
Helix 3	AA3	A	87	95	Right-handed alpha
Helix 4	AA4	A	121	134	Right-handed alpha
Helix 5	AA5	A	168	179	Right-handed alpha
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	223	234	Right-handed alpha
Helix 8	AA8	A	244	251	Right-handed alpha
Helix 9	AA9	A	267	282	Right-handed alpha
Helix 10	AB1	A	295	297	Right-handed 310
Helix 11	AB2	A	298	305	Right-handed alpha
Helix 12	AB3	A	335	349	Right-handed alpha
Helix 13	AB4	A	397	414	Right-handed alpha
Helix 14	AB5	A	464	472	Right-handed alpha
Helix 15	AB6	B	106	112	Right-handed alpha
Helix 16	AB7	B	112	121	Right-handed alpha
Helix 17	AB8	B	142	154	Right-handed alpha
Helix 18	AB9	B	155	157	Right-handed 310
Helix 19	AC1	B	273	281	Right-handed alpha
Helix 20	AC2	B	306	313	Right-handed alpha
Helix 21	AC3	B	316	320	Right-handed 310
Helix 22	AC4	B	322	338	Right-handed alpha
Helix 23	AC5	B	340	348	Right-handed alpha
Helix 24	AC6	B	355	365	Right-handed alpha
Helix 25	AC7	B	368	379	Right-handed alpha
Helix 26	AC8	B	386	399	Right-handed alpha
Helix 27	AC9	B	404	417	Right-handed alpha
Helix 28	AD1	B	421	441	Right-handed alpha
Helix 29	AD2	B	447	463	Right-handed alpha
Helix 30	AD3	B	466	481	Right-handed alpha
Helix 31	AD4	B	482	484	Right-handed 310
Helix 32	AD5	B	485	494	Right-handed alpha
Helix 33	AD6	B	497	511	Right-handed alpha
Helix 34	AD7	B	517	529	Right-handed alpha
Helix 35	AD8	B	536	550	Right-handed alpha
Helix 36	AD9	B	553	564	Right-handed alpha
Helix 37	AE1	B	568	585	Right-handed alpha
Helix 38	AE2	B	589	598	Right-handed alpha
Helix 39	AE3	B	604	609	Right-handed alpha
Helix 40	AE4	B	871	879	Right-handed alpha

There are 10 sheets in PDB entry 8EOJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	26	29	anti-parallel
Strand 3	A	78	83	parallel
Strand 4	A	44	49	parallel
Strand 5	A	102	105	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	156	160	parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	214	215	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	287	290	parallel
Strand 3	A	256	259	parallel
Strand 4	A	315	319	anti-parallel
Strand 5	A	325	327	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	422	426	parallel
Strand 3	A	389	393	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	238	first strand
Strand 2	B	248	261	anti-parallel
Strand 3	B	34	45	anti-parallel
Strand 4	B	57	67	anti-parallel
Strand 5	B	77	91	anti-parallel
Strand 6	B	123	128	anti-parallel
Strand 7	B	131	137	anti-parallel
Strand 8	B	285	287	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	173	180	anti-parallel
Strand 3	B	185	195	anti-parallel
Strand 4	B	218	222	anti-parallel
Strand 5	B	227	232	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	617	623	first strand
Strand 2	B	627	637	anti-parallel
Strand 3	B	643	654	anti-parallel
Strand 4	B	657	668	anti-parallel
Strand 5	B	690	696	anti-parallel
Strand 6	B	704	707	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	737	first strand
Strand 2	B	748	761	anti-parallel
Strand 3	B	740	742	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	737	first strand
Strand 2	B	748	761	anti-parallel
Strand 3	B	781	793	anti-parallel
Strand 4	B	798	810	anti-parallel
Strand 5	B	835	846	anti-parallel
Strand 6	B	855	863	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	764	first strand
Strand 2	B	777	778	anti-parallel
Strand 3	B	812	818	anti-parallel
Strand 4	B	825	831	anti-parallel
Strand 5	B	867	868	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOJ