Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8EOK entry

There are 6 chains in PDB entry 8EOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	SER 1	GLN 642
H	ASP 730	ASN 1641
D	SER 11	LEU 739
A	ASP 1	ARG 277
L	ARG 86	ARG 139
C	ILE 16	ARG 245

There are 52 helices in PDB entry 8EOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	55	59	Right-handed 310
Helix 2	AA2	G	281	289	Right-handed alpha
Helix 3	AA3	G	293	298	Right-handed 310
Helix 4	AA4	G	500	504	Right-handed 310
Helix 5	AA5	G	579	584	Right-handed alpha
Helix 6	AA6	G	590	601	Right-handed alpha
Helix 7	AA7	G	612	619	Right-handed alpha
Helix 8	AA8	H	988	1009	Right-handed alpha
Helix 9	AA9	H	1011	1015	Right-handed 310
Helix 10	AB1	H	1019	1037	Right-handed alpha
Helix 11	AB2	H	1053	1067	Right-handed alpha
Helix 12	AB3	H	1074	1089	Right-handed alpha
Helix 13	AB4	H	1116	1134	Right-handed alpha
Helix 14	AB5	H	1142	1156	Right-handed alpha
Helix 15	AB6	H	1163	1177	Right-handed alpha
Helix 16	AB7	H	1182	1192	Right-handed alpha
Helix 17	AB8	H	1193	1196	Right-handed 310
Helix 18	AB9	H	1203	1205	Right-handed 310
Helix 19	AC1	H	1206	1222	Right-handed alpha
Helix 20	AC2	H	1226	1235	Right-handed alpha
Helix 21	AC3	H	1248	1264	Right-handed alpha
Helix 22	AC4	H	1392	1402	Right-handed alpha
Helix 23	AC5	H	1409	1414	Right-handed 310
Helix 24	AC6	H	1475	1479	Right-handed 310
Helix 25	AC7	H	1506	1514	Right-handed alpha
Helix 26	AC8	H	1565	1567	Right-handed 310
Helix 27	AC9	H	1568	1573	Right-handed alpha
Helix 28	AD1	H	1611	1615	Right-handed 310
Helix 29	AD2	H	1620	1637	Right-handed alpha
Helix 30	AD3	D	201	214	Right-handed alpha
Helix 31	AD4	D	263	277	Right-handed alpha
Helix 32	AD5	D	306	315	Right-handed alpha
Helix 33	AD6	D	329	342	Right-handed alpha
Helix 34	AD7	D	373	384	Right-handed alpha
Helix 35	AD8	D	410	418	Right-handed alpha
Helix 36	AD9	D	432	447	Right-handed alpha
Helix 37	AE1	D	463	468	Right-handed alpha
Helix 38	AE2	D	508	512	Right-handed 310
Helix 39	AE3	D	575	581	Right-handed alpha
Helix 40	AE4	D	589	598	Right-handed alpha
Helix 41	AE5	D	627	633	Right-handed alpha
Helix 42	AE6	D	634	638	Right-handed 310
Helix 43	AE7	D	646	651	Right-handed alpha
Helix 44	AE8	D	699	703	Right-handed 310
Helix 45	AE9	D	723	731	Right-handed alpha
Helix 46	AF1	A	116	121	Right-handed alpha
Helix 47	AF2	A	188	192	Right-handed 310
Helix 48	AF3	L	91	96	Right-handed 310
Helix 49	AF4	C	55	60	Right-handed 310
Helix 50	AF5	C	124	131	Right-handed alpha
Helix 51	AF6	C	164	172	Right-handed alpha
Helix 52	AF7	C	234	242	Right-handed alpha

There are 39 sheets in PDB entry 8EOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	68	first strand
Strand 2	G	16	24	anti-parallel
Strand 3	G	4	9	anti-parallel
Strand 4	G	622	626	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	94	102	parallel
Strand 3	G	82	89	anti-parallel
Strand 4	G	32	38	anti-parallel
Strand 5	G	48	53	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	107	112	first strand
Strand 2	G	122	130	anti-parallel
Strand 3	G	166	172	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	196	202	parallel
Strand 3	G	180	188	anti-parallel
Strand 4	G	140	146	anti-parallel
Strand 5	G	152	159	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	210	216	first strand
Strand 2	G	229	237	anti-parallel
Strand 3	G	276	280	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	258	272	first strand
Strand 2	G	244	255	anti-parallel
Strand 3	G	301	309	anti-parallel
Strand 4	G	316	324	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	333	334	first strand
Strand 2	G	348	354	anti-parallel
Strand 3	G	384	389	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	376	377	first strand
Strand 2	G	367	368	anti-parallel
Strand 3	G	399	404	anti-parallel
Strand 4	G	416	420	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	448	454	first strand
Strand 2	G	492	498	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	477	485	first strand
Strand 2	G	467	474	anti-parallel
Strand 3	G	506	515	anti-parallel
Strand 4	G	523	532	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	542	545	first strand
Strand 2	G	558	565	anti-parallel
Strand 3	H	765	772	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	748	749	first strand
Strand 2	G	570	577	anti-parallel
Strand 3	H	779	787	anti-parallel
Strand 4	H	793	795	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	753	755	first strand
Strand 2	G	570	577	anti-parallel
Strand 3	H	779	787	anti-parallel
Strand 4	H	799	802	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	807	812	first strand
Strand 2	H	823	831	anti-parallel
Strand 3	H	870	880	anti-parallel
Strand 4	H	850	851	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	816	818	first strand
Strand 2	H	900	910	parallel
Strand 3	H	884	894	anti-parallel
Strand 4	H	838	844	anti-parallel
Strand 5	H	862	866	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	914	925	first strand
Strand 2	H	1318	1328	anti-parallel
Strand 3	H	955	962	anti-parallel
Strand 4	H	1298	1302	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	936	937	first strand
Strand 2	H	1309	1315	anti-parallel
Strand 3	H	1271	1277	anti-parallel
Strand 4	H	1285	1286	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1342	1346	first strand
Strand 2	H	1362	1368	anti-parallel
Strand 3	H	1435	1443	anti-parallel
Strand 4	H	1389	1391	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1405	1406	first strand
Strand 2	H	1421	1426	anti-parallel
Strand 3	H	1379	1384	anti-parallel
Strand 4	H	1454	1459	anti-parallel
Strand 5	H	1466	1469	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1598	1599	first strand
Strand 2	H	1559	1564	parallel
Strand 3	H	1537	1548	anti-parallel
Strand 4	H	1521	1531	anti-parallel
Strand 5	H	1579	1584	anti-parallel
Strand 6	H	1605	1609	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	20	first strand
Strand 2	D	71	75	parallel
Strand 3	D	41	44	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	27	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	48	50	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	101	105	anti-parallel
Strand 3	D	117	119	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	113	first strand
Strand 2	D	132	134	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	152	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	177	179	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	293	297	first strand
Strand 2	D	282	289	anti-parallel
Strand 3	D	243	251	parallel
Strand 4	D	355	362	parallel
Strand 5	D	398	405	parallel
Strand 6	D	427	430	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	471	477	first strand
Strand 2	D	483	489	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	498	first strand
Strand 2	D	553	556	anti-parallel
Strand 3	D	527	530	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	602	611	first strand
Strand 2	D	614	623	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	655	658	first strand
Strand 2	D	715	719	anti-parallel
Strand 3	D	685	695	anti-parallel
Strand 4	D	677	682	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	8	first strand
Strand 2	A	54	64	anti-parallel
Strand 3	A	101	110	anti-parallel
Strand 4	A	15	23	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	44	47	anti-parallel
Strand 3	A	91	93	anti-parallel
Strand 4	A	77	79	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	167	171	anti-parallel
Strand 4	A	212	217	anti-parallel
Strand 5	A	252	261	anti-parallel
Strand 6	A	180	187	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	167	171	anti-parallel
Strand 4	A	212	217	anti-parallel
Strand 5	A	252	261	anti-parallel
Strand 6	A	208	210	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	201	first strand
Strand 2	A	241	247	anti-parallel
Strand 3	A	228	230	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	103	first strand
Strand 2	L	106	109	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	117	first strand
Strand 2	L	124	126	anti-parallel

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There are 7 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	135	140	anti-parallel
Strand 4	C	198	203	anti-parallel
Strand 5	C	206	215	anti-parallel
Strand 6	C	226	230	anti-parallel
Strand 7	C	180	183	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	51	54	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	81	90	anti-parallel
Strand 6	C	65	68	anti-parallel
Strand 7	C	30	34	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8EOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOK