Analysis of interatomic Contacts of Structural Units in PDB entry:
8EOR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8EOR entry

There are 3 chains in PDB entry 8EOR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 22LYS 553
B
 SER 22LYS 553
C
 SER 22LYS 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 63 helices in PDB entry 8EOR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 64Right-handed 310
Helix 2
AA2
A
90 102Right-handed alpha
Helix 3
AA3
A
148 152Right-handed 310
Helix 4
AA4
A
154 162Right-handed alpha
Helix 5
AA5
A
172 178Right-handed alpha
Helix 6
AA6
A
188 205Right-handed alpha
Helix 7
AA7
A
221 233Right-handed alpha
Helix 8
AA8
A
261 273Right-handed alpha
Helix 9
AA9
A
278 288Right-handed alpha
Helix 10
AB1
A
290 302Right-handed alpha
Helix 11
AB2
A
331 339Right-handed alpha
Helix 12
AB3
A
357 362Right-handed alpha
Helix 13
AB4
A
367 371Right-handed 310
Helix 14
AB5
A
374 385Right-handed alpha
Helix 15
AB6
A
394 405Right-handed alpha
Helix 16
AB7
A
409 426Right-handed alpha
Helix 17
AB8
A
426 440Right-handed alpha
Helix 18
AB9
A
471 476Right-handed alpha
Helix 19
AC1
A
477 482Right-handed alpha
Helix 20
AC2
A
486 507Right-handed alpha
Helix 21
AC3
A
540 552Right-handed alpha
Helix 22
AC4
B
60 64Right-handed 310
Helix 23
AC5
B
90 102Right-handed alpha
Helix 24
AC6
B
148 152Right-handed 310
Helix 25
AC7
B
154 162Right-handed alpha
Helix 26
AC8
B
172 178Right-handed alpha
Helix 27
AC9
B
188 205Right-handed alpha
Helix 28
AD1
B
206 208Right-handed 310
Helix 29
AD2
B
221 233Right-handed alpha
Helix 30
AD3
B
261 273Right-handed alpha
Helix 31
AD4
B
278 288Right-handed alpha
Helix 32
AD5
B
290 302Right-handed alpha
Helix 33
AD6
B
331 338Right-handed alpha
Helix 34
AD7
B
357 362Right-handed alpha
Helix 35
AD8
B
367 371Right-handed 310
Helix 36
AD9
B
374 385Right-handed alpha
Helix 37
AE1
B
394 405Right-handed alpha
Helix 38
AE2
B
409 426Right-handed alpha
Helix 39
AE3
B
426 440Right-handed alpha
Helix 40
AE4
B
471 476Right-handed alpha
Helix 41
AE5
B
477 482Right-handed alpha
Helix 42
AE6
B
486 507Right-handed alpha
Helix 43
AE7
B
540 552Right-handed alpha
Helix 44
AE8
C
60 64Right-handed 310
Helix 45
AE9
C
90 102Right-handed alpha
Helix 46
AF1
C
154 162Right-handed alpha
Helix 47
AF2
C
172 178Right-handed alpha
Helix 48
AF3
C
188 205Right-handed alpha
Helix 49
AF4
C
221 233Right-handed alpha
Helix 50
AF5
C
261 273Right-handed alpha
Helix 51
AF6
C
278 288Right-handed alpha
Helix 52
AF7
C
290 302Right-handed alpha
Helix 53
AF8
C
331 339Right-handed alpha
Helix 54
AF9
C
357 362Right-handed alpha
Helix 55
AG1
C
367 371Right-handed 310
Helix 56
AG2
C
374 385Right-handed alpha
Helix 57
AG3
C
394 405Right-handed alpha
Helix 58
AG4
C
409 426Right-handed alpha
Helix 59
AG5
C
426 440Right-handed alpha
Helix 60
AG6
C
471 476Right-handed alpha
Helix 61
AG7
C
477 482Right-handed alpha
Helix 62
AG8
C
486 507Right-handed alpha
Helix 63
AG9
C
540 552Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8EOR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
31 34anti-parallel
Strand 3
A
78 79parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
118 123anti-parallel
Strand 4
A
164 168anti-parallel
Strand 5
A
133 139parallel
Strand 6
A
210 220parallel
Strand 7
A
242 246parallel
Strand 8
A
346 351parallel
Strand 9
A
444 450parallel
Strand 10
A
525 530parallel
Strand 11
A
534 537anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
112 113parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
78 79parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
47 54anti-parallel
Strand 3
B
118 123anti-parallel
Strand 4
B
164 168anti-parallel
Strand 5
B
133 139parallel
Strand 6
B
210 220parallel
Strand 7
B
242 246parallel
Strand 8
B
346 351parallel
Strand 9
B
444 450parallel
Strand 10
B
525 530parallel
Strand 11
B
534 537anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
112 113parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 28first strand
Strand 2
C
31 34anti-parallel
Strand 3
C
78 79parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
47 54anti-parallel
Strand 3
C
118 123anti-parallel
Strand 4
C
164 168anti-parallel
Strand 5
C
133 139parallel
Strand 6
C
210 220parallel
Strand 7
C
242 246parallel
Strand 8
C
346 351parallel
Strand 9
C
444 450parallel
Strand 10
C
525 530parallel
Strand 11
C
534 537anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
112 113parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il